Difference between revisions of "Tiso gene 10173"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-(acyl-carrier-pro...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-oxoacyl-(acyl-carrier-protein)
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[b-Keto-cis-D5-dodecenoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[b-Hydroxy-cis-D5-dodecenoyl-ACPs]][c]
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 a (5Z)-3-oxo-dodec-5-enoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R,5Z)-3-hydroxy-dodec-5-enoyl-[acp][c]
+
** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13083]]
+
* [[Tiso_gene_16284]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_9885]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
+
* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[synechocystis]]
 +
*** [[athaliana]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
−
* [[annotation]]:
+
* [[manual]]:
−
** [[pathwaytools]]:
+
** [[primary_network]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P08524 P08524]
 +
** [http://www.uniprot.org/uniprot/P05369 P05369]
 +
** [http://www.uniprot.org/uniprot/P14324 P14324]
 +
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
 +
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
 +
** [http://www.uniprot.org/uniprot/P45204 P45204]
 +
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
 +
** [http://www.uniprot.org/uniprot/P49350 P49350]
 +
** [http://www.uniprot.org/uniprot/P22939 P22939]
 +
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
 +
** [http://www.uniprot.org/uniprot/P49349 P49349]
 +
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
 +
** [http://www.uniprot.org/uniprot/P49351 P49351]
 +
** [http://www.uniprot.org/uniprot/P49352 P49352]
 +
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 +
** [http://www.uniprot.org/uniprot/O24241 O24241]
 +
** [http://www.uniprot.org/uniprot/O24242 O24242]
 +
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 +
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 +
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 +
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 +
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 +
** [http://www.uniprot.org/uniprot/P49353 P49353]
 +
** [http://www.uniprot.org/uniprot/O04882 O04882]
 +
** [http://www.uniprot.org/uniprot/O65004 O65004]
 +
** [http://www.uniprot.org/uniprot/O14230 O14230]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
+
{{#set: ec number=EC-2.5.1.10}}
−
{{#set: ec number=EC-1.1.1.100}}
+
{{#set: gene associated=Tiso_gene_16284}}
−
{{#set: gene associated=Tiso_gene_13083|Tiso_gene_9885}}
+
{{#set: in pathway=PWY-7721|PWY-6859|PWY-5123|PWY-7736|PWY-7102}}
−
{{#set: in pathway=PWY0-862}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=primary_network}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 16:51, 10 January 2018

Reaction FPPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 (2E,6E)-farnesyl diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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