Difference between revisions of "Tiso gene 6065"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-DEOH-DEOXY-GLUCOSE DTDP-DEOH-DEOXY-GLUCOSE] == * smiles: ** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-469 RXN66-469] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-branched fatty acy...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-DEOH-DEOXY-GLUCOSE DTDP-DEOH-DEOXY-GLUCOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-469 RXN66-469] ==
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* smiles:
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* direction:
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** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(C)C(=O)C(O)C(O)2))O3))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=PSXWNITXWWECNY-UCBTUHGZSA-L
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* common name:
 
* common name:
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** dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
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** 3-methyl-branched fatty acyl-CoA ligase
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* molecular weight:
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** polyketide_synthase
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** 544.302   
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** TDP-4-keto-6-deoxy--α-D-glucose
 
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** TDP-4-oxo-6-deoxy--α-D-glucose
 
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** dTDP-4-oxo-6-deoxy--α-D-glucose
 
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** dTDP-6-deoxy-α-D-xylo-4-hexosulose
 
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** dTDP-6-deoxy-α-D-xylohex-4-ulose
 
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** dTDP-4-dehydro-6-deoxy-α-D-glucose
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[DTDPGLUCDEHYDRAT-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[3-Methyl-Saturated-Fatty-Acids]][c] '''=>''' 1 [[3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 a 3-methyl-branched 2,3,4-saturated fatty acid[c] '''=>''' 1 a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
 +
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY66-387]], fatty acid α-oxidation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-387 PWY66-387]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* BIGG : dtdp4d6dg
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: common name=3-methyl-branched fatty acyl-CoA ligase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25244163 25244163]
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{{#set: common name=polyketide_synthase}}
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* HMDB : HMDB01399
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{{#set: common name=long_chain_acyl-_synthetase}}
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* LIGAND-CPD:
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{{#set: common name=acyl-_synthetase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C11907 C11907]
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{{#set: common name=ORF}}
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* CHEBI:
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{{#set: ec number=EC-6.2.1.3}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57649 57649]
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{{#set: gene associated=Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_9394|Tiso_gene_348|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_4191|Tiso_gene_136}}
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* METABOLIGHTS : MTBLC57649
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{{#set: in pathway=PWY66-387}}
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{{#set: smiles=CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(C)C(=O)C(O)C(O)2))O3))}}
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{{#set: reconstruction category=orthology}}
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{{#set: inchi key=InChIKey=PSXWNITXWWECNY-UCBTUHGZSA-L}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=dTDP-4-dehydro-6-deoxy-α-D-glucopyranose}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: molecular weight=544.302    }}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=TDP-4-keto-6-deoxy--α-D-glucose|TDP-4-oxo-6-deoxy--α-D-glucose|dTDP-4-oxo-6-deoxy--α-D-glucose|dTDP-6-deoxy-α-D-xylo-4-hexosulose|dTDP-6-deoxy-α-D-xylohex-4-ulose|dTDP-4-dehydro-6-deoxy-α-D-glucose}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: produced by=DTDPGLUCDEHYDRAT-RXN}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:52, 10 January 2018

Reaction RXN66-469

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-methyl-branched fatty acyl-CoA ligase
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-387, fatty acid α-oxidation II: PWY66-387
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6065&oldid=14994"