Difference between revisions of "CPD-7409"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_12496 == * left end position: ** 27 * transcription direction: ** NEGATIVE * right end position: ** 4124 * centisome position: ** 0.3888808...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** PSase ** geranylgerany...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_12496 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
−
* left end position:
+
* direction:
−
** 27
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
−
** NEGATIVE
+
−
* right end position:
+
−
** 4124
+
−
* centisome position:
+
−
** 0.38888088   
+
 
* Synonym(s):
 
* Synonym(s):
 +
** PSase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 2 geranylgeranyl diphosphate[c] '''=>''' 1 prephytoene diphosphate[c] '''+''' 1 diphosphate[c]
−
***ec-number
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_15914]]
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
== Pathways associated ==
+
== Pathways ==
−
* [[TRNA-CHARGING-PWY]]
+
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=27}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
−
{{#set: right end position=4124}}
+
* LIGAND-RXN:
−
{{#set: centisome position=0.38888088    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
−
{{#set: reaction associated=ISOLEUCINE--TRNA-LIGASE-RXN}}
+
* UNIPROT:
−
{{#set: pathway associated=TRNA-CHARGING-PWY}}
+
** [http://www.uniprot.org/uniprot/P53609 P53609]
 +
** [http://www.uniprot.org/uniprot/P37295 P37295]
 +
** [http://www.uniprot.org/uniprot/P22872 P22872]
 +
** [http://www.uniprot.org/uniprot/P53610 P53610]
 +
** [http://www.uniprot.org/uniprot/P53612 P53612]
 +
** [http://www.uniprot.org/uniprot/P17056 P17056]
 +
** [http://www.uniprot.org/uniprot/P49293 P49293]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
 +
{{#set: gene associated=Tiso_gene_15914}}
 +
{{#set: in pathway=PWY-6287|PWY-6475}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=synechocystis|esiliculosus}}

Revision as of 17:52, 10 January 2018

Reaction 2.5.1.32-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] => 1 prephytoene diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 5 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-7409&oldid=15013"