Difference between revisions of "SEROTONIN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8025 RXN-8025] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** β-carotene 3,3′-mon...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7737 RXN-7737] == * direction: ** REVERSIBLE * common name: ** ll-diaminopimelate_chloroplastic...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8025 RXN-8025] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7737 RXN-7737] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** ll-diaminopimelate_chloroplastic
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.6.1.83 EC-2.6.1.83]
 
* Synonym(s):
 
* Synonym(s):
−
** β-carotene 3,3′-monooxygenase
 
−
** CrtZ
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD1F-129]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CPD-7409]][c]
+
** 1 [[LL-DIAMINOPIMELATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 all-trans-&beta;-carotene[c] '''+''' 1 H+[c] '''+''' 1 oxygen[c] '''+''' 1 NADH[c] '''=>''' 1 H2O[c] '''+''' 1 NAD+[c] '''+''' 1 &beta;-cryptoxanthin[c]
+
** 1 L,L-diaminopimelate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 (S)-2,3,4,5-tetrahydrodipicolinate[c] '''+''' 1 L-glutamate[c] '''+''' 1 H2O[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10837]]
+
* [[Tiso_gene_18833]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5288 PWY-5288]
+
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5944]], zeaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5944 PWY-5944]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7638 PWY-7638]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[synechocystis]]
 
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30326 30326]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23988 23988]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07558 R07558]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07613 R07613]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=&beta;-carotene 3,3&prime;-monooxygenase|CrtZ}}
+
{{#set: common name=ll-diaminopimelate_chloroplastic}}
−
{{#set: gene associated=Tiso_gene_10837}}
+
{{#set: ec number=EC-2.6.1.83}}
−
{{#set: in pathway=PWY-5288|PWY-5944|PWY-7638}}
+
{{#set: gene associated=Tiso_gene_18833}}
 +
{{#set: in pathway=PWY-5097}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:53, 10 January 2018

Reaction RXN-7737

  • direction:
    • REVERSIBLE
  • common name:
    • ll-diaminopimelate_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SEROTONIN&oldid=15143"