Difference between revisions of "RXN-13441"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12086 RXN-12086] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** zinc_finger_fyve_dom...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12086 RXN-12086] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** 2-isopropylmalate_synthase_chloroplastic
−
** zinc_finger_fyve_domain-containing_protein
+
−
** triacylglycerol_lipase
+
−
** class_3_lipase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.3 EC-3.1.1.3]
+
** [http://enzyme.expasy.org/EC/2.3.3.13 EC-2.3.3.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-13014]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[BUTYRIC_ACID]][c] '''+''' 1 [[CPD-13040]][c]
+
** 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 tributyrin[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 butanoate[c] '''+''' 1 1,2-dibutyrin[c]
+
** 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 coenzyme A[c] '''+''' 1 (2S)-2-isopropylmalate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17614]]
+
* [[Tiso_gene_11453]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17613]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_905]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11437]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14064]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7915]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17639]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14063]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_288]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_9140]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5716]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2983]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17612]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19184]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_906]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2109]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14109]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16817]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2108]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17143]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8902]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_14062]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3215]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 
*** [[esiliculosus]]
 
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
Line 105: Line 45:
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06208 P06208]
 +
** [http://www.uniprot.org/uniprot/Q58595 Q58595]
 +
** [http://www.uniprot.org/uniprot/P09151 P09151]
 +
** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
 +
** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
 +
** [http://www.uniprot.org/uniprot/Q58787 Q58787]
 +
** [http://www.uniprot.org/uniprot/P94565 P94565]
 +
** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
 +
** [http://www.uniprot.org/uniprot/Q02141 Q02141]
 +
** [http://www.uniprot.org/uniprot/P48575 P48575]
 +
** [http://www.uniprot.org/uniprot/O86511 O86511]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=2-isopropylmalate_synthase_chloroplastic}}
−
{{#set: common name=zinc_finger_fyve_domain-containing_protein}}
+
{{#set: ec number=EC-2.3.3.13}}
−
{{#set: common name=triacylglycerol_lipase}}
+
{{#set: gene associated=Tiso_gene_11453}}
−
{{#set: common name=class_3_lipase}}
+
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
−
{{#set: ec number=EC-3.1.1.3}}
+
−
{{#set: gene associated=Tiso_gene_17614|Tiso_gene_17613|Tiso_gene_905|Tiso_gene_11437|Tiso_gene_14064|Tiso_gene_7915|Tiso_gene_17639|Tiso_gene_14063|Tiso_gene_288|Tiso_gene_9140|Tiso_gene_5716|Tiso_gene_2983|Tiso_gene_17612|Tiso_gene_19184|Tiso_gene_906|Tiso_gene_2109|Tiso_gene_14109|Tiso_gene_16817|Tiso_gene_2108|Tiso_gene_17143|Tiso_gene_8902|Tiso_gene_14062|Tiso_gene_3215}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 16:55, 10 January 2018

Reaction 2-ISOPROPYLMALATESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-isopropylmalate_synthase_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13441&oldid=15280"