Difference between revisions of "CPD-17386"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_17798 == * left end position: ** 721 * transcription direction: ** POSITIVE * right end position: ** 2318 * centisome position: ** 20.88644...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** riboflavin_...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_17798 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] ==
−
* left end position:
+
* direction:
−
** 721
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** riboflavin_kinase
−
* right end position:
+
* ec number:
−
** 2318
+
** [http://enzyme.expasy.org/EC/2.7.1.26 EC-2.7.1.26]
−
* centisome position:
+
−
** 20.886442   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[RXN-10058]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[RIBOFLAVIN]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FMN]][c]
−
***automated-name-match
+
* With common name(s):
−
* [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
+
** 1 riboflavin[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 FMN[c]
−
** in-silico_annotation
+
 
−
***ec-number
+
== Genes associated with this reaction  ==
−
== Pathways associated ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-6167]]
+
* [[Tiso_gene_1086]]
−
* [[PWY-6168]]
+
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_16837]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7479]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
== Pathways  ==
 +
* [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=721}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14357 14357]
−
{{#set: right end position=2318}}
+
* LIGAND-RXN:
−
{{#set: centisome position=20.886442    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549]
−
{{#set: reaction associated=RXN-10058|TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-6167|PWY-6168}}
+
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
 +
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
 +
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=riboflavin_kinase}}
 +
{{#set: ec number=EC-2.7.1.26}}
 +
{{#set: gene associated=Tiso_gene_1086|Tiso_gene_16837|Tiso_gene_7479}}
 +
{{#set: in pathway=PWY66-366|PWY-6168|RIBOSYN2-PWY|PWY-5523}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 16:59, 10 January 2018

Reaction RIBOFLAVINKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 riboflavin[c] + 1 ATP[c] => 1 ADP[c] + 1 H+[c] + 1 FMN[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5523, 5,6-dimethylbenzimidazole biosynthesis I (aerobic): PWY-5523
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-17386&oldid=15574"