Difference between revisions of "NAcMur-Peptide-NAcGlc-Undecaprenols"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-5821 CPD-5821] == * smiles: ** C(C1(O)(NC(=O)N=C1NC(N)=O))(=O)[O-] * inchi key: ** InChIKey...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glycerol-3-phosp...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-5821 CPD-5821] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] ==
−
* smiles:
+
* direction:
−
** C(C1(O)(NC(=O)N=C1NC(N)=O))(=O)[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=WHKYNCPIXMNTRQ-UHFFFAOYSA-M
+
 
* common name:
 
* common name:
−
** 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
+
** ORF
−
* molecular weight:
+
** glycerol-3-phosphate_dehydrogenase
−
** 201.118   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.8 EC-1.1.1.8]
 
* Synonym(s):
 
* Synonym(s):
−
** 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylate
 
−
** OHCU
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-6201]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[GLYCEROL-3P]][c]
−
* [[3.5.2.17-RXN]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 glycerone phosphate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 sn-glycerol 3-phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_15777]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2810]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6069]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_3718]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_13013]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_2811]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-6118]], glycerol-3-phosphate shuttle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6118 PWY-6118]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7411]], phosphatidate biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7411 PWY-7411]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=21145222 21145222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
−
* CHEMSPIDER:
+
* UNIPROT:
−
** [http://www.chemspider.com/Chemical-Structure.20016217.html 20016217]
+
** [http://www.uniprot.org/uniprot/P13707 P13707]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P08507 P08507]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58639 58639]
+
** [http://www.uniprot.org/uniprot/O25614 O25614]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
−
** [http://www.genome.jp/dbget-bin/www_bget?C12248 C12248]
+
** [http://www.uniprot.org/uniprot/P43798 P43798]
−
* HMDB : HMDB59663
+
** [http://www.uniprot.org/uniprot/O29390 O29390]
−
{{#set: smiles=C(C1(O)(NC(=O)N=C1NC(N)=O))(=O)[O-]}}
+
** [http://www.uniprot.org/uniprot/P46919 P46919]
−
{{#set: inchi key=InChIKey=WHKYNCPIXMNTRQ-UHFFFAOYSA-M}}
+
** [http://www.uniprot.org/uniprot/P07735 P07735]
−
{{#set: common name=2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline}}
+
** [http://www.uniprot.org/uniprot/P13706 P13706]
−
{{#set: molecular weight=201.118    }}
+
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
−
{{#set: common name=5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylate|OHCU}}
+
** [http://www.uniprot.org/uniprot/P34517 P34517]
−
{{#set: consumed by=RXN-6201}}
+
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
−
{{#set: produced by=3.5.2.17-RXN}}
+
** [http://www.uniprot.org/uniprot/P21695 P21695]
 +
** [http://www.uniprot.org/uniprot/P41911 P41911]
 +
** [http://www.uniprot.org/uniprot/P90593 P90593]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=glycerol-3-phosphate_dehydrogenase}}
 +
{{#set: ec number=EC-1.1.1.8}}
 +
{{#set: gene associated=Tiso_gene_15777|Tiso_gene_2810|Tiso_gene_6069|Tiso_gene_3718|Tiso_gene_13013|Tiso_gene_2811}}
 +
{{#set: in pathway=PWY-6118|PWY-7411|PWY-7385}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:59, 10 January 2018

Reaction 1.1.1.8-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • glycerol-3-phosphate_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6118, glycerol-3-phosphate shuttle: PWY-6118
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7411, phosphatidate biosynthesis (yeast): PWY-7411
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links








Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=NAcMur-Peptide-NAcGlc-Undecaprenols&oldid=15583"