Difference between revisions of "CPD-13576"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** REVERSIBLE * common name: ** serine_hydroxyme...")
 
(Created page with "Category:Gene == Gene Tiso_gene_12280 == * left end position: ** 25 * transcription direction: ** POSITIVE * right end position: ** 3075 * centisome position: ** 0.3482379...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] ==
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== Gene Tiso_gene_12280 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 25
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* common name:
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* transcription direction:
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** serine_hydroxymethyltransferase
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** POSITIVE
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** serine_cytosolic-like_isoform_1
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* right end position:
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** serine_hydroxymethyltransferase_mitochondrial
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** 3075
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** ORF
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* centisome position:
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* ec number:
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** 0.34823793   
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** [http://enzyme.expasy.org/EC/2.1.2.1 EC-2.1.2.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GUANINE-DEAMINASE-RXN]]
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** 1 [[THF-GLU-N]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 a tetrahydrofolate[c] '''+''' 1 L-serine[c] '''<=>''' 1 glycine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 H2O[c]
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** [[pantograph]]-[[creinhardtii]]
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* [[RXN-15261]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* [[Tiso_gene_16153]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[P164-PWY]]
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***EC-NUMBER
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* [[PWY-6608]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-7442]]
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***EC-NUMBER
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* [[PWY-5497]]
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* [[Tiso_gene_16154]]
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* [[PWY-6606]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18652]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7776]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
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** '''7''' reactions found over '''24''' reactions in the full pathway
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=25}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3075}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
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{{#set: centisome position=0.34823793    }}
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* UNIPROT:
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{{#set: reaction associated=GUANINE-DEAMINASE-RXN|RXN-15261}}
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** [http://www.uniprot.org/uniprot/P35623 P35623]
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{{#set: pathway associated=P164-PWY|PWY-6608|PWY-7442|PWY-5497|PWY-6606}}
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** [http://www.uniprot.org/uniprot/P34898 P34898]
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** [http://www.uniprot.org/uniprot/P34899 P34899]
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** [http://www.uniprot.org/uniprot/P34896 P34896]
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** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
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** [http://www.uniprot.org/uniprot/P34897 P34897]
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** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
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** [http://www.uniprot.org/uniprot/O23254 O23254]
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** [http://www.uniprot.org/uniprot/O53441 O53441]
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** [http://www.uniprot.org/uniprot/O08370 O08370]
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** [http://www.uniprot.org/uniprot/P43844 P43844]
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** [http://www.uniprot.org/uniprot/Q58992 Q58992]
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** [http://www.uniprot.org/uniprot/O66776 O66776]
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** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
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** [http://www.uniprot.org/uniprot/P47634 P47634]
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** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
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** [http://www.uniprot.org/uniprot/P56089 P56089]
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** [http://www.uniprot.org/uniprot/O53615 O53615]
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** [http://www.uniprot.org/uniprot/O83349 O83349]
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** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
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** [http://www.uniprot.org/uniprot/O51547 O51547]
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** [http://www.uniprot.org/uniprot/O84439 O84439]
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** [http://www.uniprot.org/uniprot/P24531 P24531]
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** [http://www.uniprot.org/uniprot/P39148 P39148]
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** [http://www.uniprot.org/uniprot/P24060 P24060]
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** [http://www.uniprot.org/uniprot/P37292 P37292]
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** [http://www.uniprot.org/uniprot/P34895 P34895]
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** [http://www.uniprot.org/uniprot/P34894 P34894]
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** [http://www.uniprot.org/uniprot/P49357 P49357]
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** [http://www.uniprot.org/uniprot/P49358 P49358]
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** [http://www.uniprot.org/uniprot/P50433 P50433]
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** [http://www.uniprot.org/uniprot/P37291 P37291]
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** [http://www.uniprot.org/uniprot/P78011 P78011]
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** [http://www.uniprot.org/uniprot/P77962 P77962]
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** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
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** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
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** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
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** [http://www.uniprot.org/uniprot/O23984 O23984]
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** [http://www.uniprot.org/uniprot/P0A825 P0A825]
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** [http://www.uniprot.org/uniprot/P07511 P07511]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=serine_hydroxymethyltransferase}}
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{{#set: common name=serine_cytosolic-like_isoform_1}}
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{{#set: common name=serine_hydroxymethyltransferase_mitochondrial}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.1.2.1}}
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{{#set: gene associated=Tiso_gene_16153|Tiso_gene_16154|Tiso_gene_18652|Tiso_gene_7776}}
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{{#set: in pathway=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:00, 10 January 2018

Gene Tiso_gene_12280

  • left end position:
    • 25
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3075
  • centisome position:
    • 0.34823793
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-13576&oldid=15650"