Difference between revisions of "RXN-11334"

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(Created page with "Category:Gene == Gene Tiso_gene_15721 == * left end position: ** 1031 * transcription direction: ** NEGATIVE * right end position: ** 4790 * centisome position: ** 21.2708...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] == * direction: ** REVERSIBLE * common name: ** carbonic_anhydrase ** gamma_ca...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_15721 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] ==
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* left end position:
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* direction:
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** 1031
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** carbonic_anhydrase
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* right end position:
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** gamma_carbonic_anhydrase
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** 4790
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** ORF
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* centisome position:
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** beta-type_carbonic_anhydrase
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** 21.27089   
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** alpha_ca
 +
* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.1 EC-4.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.7.1.68-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[HCO3]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 hydrogencarbonate[c] '''+''' 1 H+[c] '''<=>''' 1 CO2[c] '''+''' 1 H2O[c]
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* [[PWY-6352]]
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* [[PWY-6351]]
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== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6150]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19414]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17511]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9852]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18927]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3056]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19413]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1600]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_20230]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7660]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[CYANCAT-PWY]], cyanate degradation: [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
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* [[manual]]:
 +
** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1031}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10748 10748]
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{{#set: right end position=4790}}
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{{#set: direction=REVERSIBLE}}
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{{#set: centisome position=21.27089    }}
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{{#set: common name=carbonic_anhydrase}}
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{{#set: reaction associated=2.7.1.68-RXN}}
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{{#set: common name=gamma_carbonic_anhydrase}}
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{{#set: pathway associated=PWY-6352|PWY-6351}}
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{{#set: common name=ORF}}
 +
{{#set: common name=beta-type_carbonic_anhydrase}}
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{{#set: common name=alpha_ca}}
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{{#set: ec number=EC-4.2.1.1}}
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{{#set: gene associated=Tiso_gene_6150|Tiso_gene_19414|Tiso_gene_17511|Tiso_gene_9852|Tiso_gene_18927|Tiso_gene_3056|Tiso_gene_19413|Tiso_gene_1600|Tiso_gene_20230|Tiso_gene_7660}}
 +
{{#set: in pathway=PWY-241|PWYQT-4429|PWY-7117|PWY-7115|PWY-6142|CYANCAT-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:02, 10 January 2018

Reaction RXN0-5224

  • direction:
    • REVERSIBLE
  • common name:
    • carbonic_anhydrase
    • gamma_carbonic_anhydrase
    • ORF
    • beta-type_carbonic_anhydrase
    • alpha_ca
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hydrogencarbonate[c] + 1 H+[c] <=> 1 CO2[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 2 reactions found over 5 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • CYANCAT-PWY, cyanate degradation: CYANCAT-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links









Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11334&oldid=15840"