Difference between revisions of "GLUTATHIONE-PEROXIDASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE--COA-LIGASE-GDP-FORMING-RXN SUCCINATE--COA-LIGASE-GDP-FORMING-RXN] == * direction: ** REV...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidyla...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE--COA-LIGASE-GDP-FORMING-RXN SUCCINATE--COA-LIGASE-GDP-FORMING-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** thymidylate_synthase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.4 EC-6.2.1.4]
+
** [http://enzyme.expasy.org/EC/2.1.1.45 EC-2.1.1.45]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
** 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 succinate[c] '''+''' 1 coenzyme A[c] '''+''' 1 GTP[c] '''<=>''' 1 GDP[c] '''+''' 1 phosphate[c] '''+''' 1 succinyl-CoA[c]
+
** 1 dUMP[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''=>''' 1 a 7,8-dihydrofolate[c] '''+''' 1 dTMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11866]]
+
* [[Tiso_gene_7708]]
−
** [[pantograph]]-[[esiliculosus]]
+
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18478]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* [[manual]]:
−
** [[pantograph]]:
+
** [[primary_network]]
−
*** [[esiliculosus]]
+
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22120 22120]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q03184 Q03184]
+
** [http://www.uniprot.org/uniprot/P19368 P19368]
−
** [http://www.uniprot.org/uniprot/O08371 O08371]
+
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
−
** [http://www.uniprot.org/uniprot/O84829 O84829]
+
** [http://www.uniprot.org/uniprot/P47469 P47469]
−
** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
+
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
−
** [http://www.uniprot.org/uniprot/P53587 P53587]
+
** [http://www.uniprot.org/uniprot/P42326 P42326]
−
** [http://www.uniprot.org/uniprot/P53312 P53312]
+
** [http://www.uniprot.org/uniprot/O02604 O02604]
−
** [http://www.uniprot.org/uniprot/P36967 P36967]
+
** [http://www.uniprot.org/uniprot/P07382 P07382]
−
** [http://www.uniprot.org/uniprot/P13086 P13086]
+
** [http://www.uniprot.org/uniprot/P16126 P16126]
−
** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
+
** [http://www.uniprot.org/uniprot/P13922 P13922]
−
** [http://www.uniprot.org/uniprot/P68209 P68209]
+
** [http://www.uniprot.org/uniprot/P20712 P20712]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/P11044 P11044]
−
{{#set: ec number=EC-6.2.1.4}}
+
** [http://www.uniprot.org/uniprot/P45350 P45350]
−
{{#set: gene associated=Tiso_gene_11866}}
+
** [http://www.uniprot.org/uniprot/P45352 P45352]
−
{{#set: in pathway=PWY66-398}}
+
** [http://www.uniprot.org/uniprot/P51820 P51820]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
−
{{#set: reconstruction source=esiliculosus}}
+
** [http://www.uniprot.org/uniprot/P09249 P09249]
 +
** [http://www.uniprot.org/uniprot/P12462 P12462]
 +
** [http://www.uniprot.org/uniprot/P07606 P07606]
 +
** [http://www.uniprot.org/uniprot/P00471 P00471]
 +
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
 +
** [http://www.uniprot.org/uniprot/P00469 P00469]
 +
** [http://www.uniprot.org/uniprot/O81395 O81395]
 +
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
 +
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
 +
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
 +
** [http://www.uniprot.org/uniprot/P06785 P06785]
 +
** [http://www.uniprot.org/uniprot/P04818 P04818]
 +
** [http://www.uniprot.org/uniprot/P07607 P07607]
 +
** [http://www.uniprot.org/uniprot/P13100 P13100]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=thymidylate_synthase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-2.1.1.45}}
 +
{{#set: gene associated=Tiso_gene_7708|Tiso_gene_18478}}
 +
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7199|PWY-3841|PWY-7184|PWY-7187|PWY0-166|1CMET2-PWY}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:08, 10 January 2018

Reaction THYMIDYLATESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thymidylate_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7199, pyrimidine deoxyribonucleosides salvage: PWY-7199
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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