Difference between revisions of "RX"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_17660 == * left end position: ** 1003 * transcription direction: ** NEGATIVE * right end position: ** 2560 * centisome position: ** 14.4670...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protein-tyrosine_...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_17660 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGPPHOSPHA-RXN PGPPHOSPHA-RXN] ==
−
* left end position:
+
* direction:
−
** 1003
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** protein-tyrosine_phosphatase_mitochondrial_1
−
* right end position:
+
* ec number:
−
** 2560
+
** [http://enzyme.expasy.org/EC/3.1.3.27 EC-3.1.3.27]
−
* centisome position:
+
−
** 14.467041   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL]][c] '''+''' 1 [[Pi]][c]
−
***ec-number
+
* With common name(s):
−
== Pathways associated ==
+
** 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 an L-1-phosphatidyl-sn-glycerol[c] '''+''' 1 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_18092]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
 +
** '''7''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=1003}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16725 16725]
−
{{#set: right end position=2560}}
+
* LIGAND-RXN:
−
{{#set: centisome position=14.467041    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02029 R02029]
−
{{#set: reaction associated=DNA-DIRECTED-DNA-POLYMERASE-RXN}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P18200 P18200]
 +
** [http://www.uniprot.org/uniprot/Q9JRA8 Q9JRA8]
 +
** [http://www.uniprot.org/uniprot/Q9PM65 Q9PM65]
 +
** [http://www.uniprot.org/uniprot/P0A924 P0A924]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=protein-tyrosine_phosphatase_mitochondrial_1}}
 +
{{#set: ec number=EC-3.1.3.27}}
 +
{{#set: gene associated=Tiso_gene_18092}}
 +
{{#set: in pathway=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:12, 10 January 2018

Reaction PGPPHOSPHA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protein-tyrosine_phosphatase_mitochondrial_1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • Tiso_gene_18092
    • IN-SILICO_ANNOTATION
      • EC-NUMBER
    • EXPERIMENTAL_ANNOTATION
      • EC-NUMBER

Pathways

  • PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic): PWY4FS-7
    • 3 reactions found over 4 reactions in the full pathway
  • PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic): PWY4FS-8
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5269, cardiolipin biosynthesis II: PWY-5269
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus): PWY-7817
    • 7 reactions found over 16 reactions in the full pathway
  • PWY-5668, cardiolipin biosynthesis I: PWY-5668
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1545, cardiolipin biosynthesis III: PWY0-1545
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RX&oldid=16677"