Difference between revisions of "CPD-396"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-396 CPD-396] == * smiles: ** C[N+]1(=CC=CC(=C1)C(=O)N) * inchi key: ** InChIKey=LDHMAVIPBRS...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUDPKIN-RXN DUDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-396 CPD-396] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUDPKIN-RXN DUDPKIN-RXN] ==
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* smiles:
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* direction:
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** C[N+]1(=CC=CC(=C1)C(=O)N)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=LDHMAVIPBRSVRG-UHFFFAOYSA-O
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* common name:
 
* common name:
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** 1-methylnicotinamide
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** ORF
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* molecular weight:
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** adenylate_kinase_domain-containing_protein_1
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** 137.161   
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** nucleoside_diphosphate_kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[NICOTINAMIDE-N-METHYLTRANSFERASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 dUDP[c] '''=>''' 1 ADP[c] '''+''' 1 dUTP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_16529]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17271]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18224]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9290]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_195]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17272]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''12''' reactions found over '''17''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=457 457]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28582 28582]
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* HMDB : HMDB00699
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* LIGAND-RXN:
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* LIGAND-CPD:
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** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
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** [http://www.genome.jp/dbget-bin/www_bget?C02918 C02918]
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{{#set: direction=LEFT-TO-RIGHT}}
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* CHEMSPIDER:
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{{#set: common name=ORF}}
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** [http://www.chemspider.com/Chemical-Structure.444.html 444]
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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* CHEBI:
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{{#set: common name=nucleoside_diphosphate_kinase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16797 16797]
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{{#set: ec number=EC-2.7.4.6}}
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* METABOLIGHTS : MTBLC16797
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{{#set: gene associated=Tiso_gene_16529|Tiso_gene_17271|Tiso_gene_18224|Tiso_gene_9290|Tiso_gene_195|Tiso_gene_17272}}
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{{#set: smiles=C[N+]1(=CC=CC(=C1)C(=O)N)}}
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{{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}}
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{{#set: inchi key=InChIKey=LDHMAVIPBRSVRG-UHFFFAOYSA-O}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=1-methylnicotinamide}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: molecular weight=137.161    }}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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{{#set: produced by=NICOTINAMIDE-N-METHYLTRANSFERASE-RXN}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 18:16, 10 January 2018

Reaction DUDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • adenylate_kinase_domain-containing_protein_1
    • nucleoside_diphosphate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dUDP[c] => 1 ADP[c] + 1 dUTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway

Reconstruction information

External links








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