Difference between revisions of "AMIDASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUDPKIN-RXN DUDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** adenylate_kinase...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE FORMALDEHYDE] == * smiles: ** [CH2]=O * inchi key: ** InChIKey=WSFSSNUMVMOOMR-UHFF...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUDPKIN-RXN DUDPKIN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE FORMALDEHYDE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** [CH2]=O
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* inchi key:
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** InChIKey=WSFSSNUMVMOOMR-UHFFFAOYSA-N
 
* common name:
 
* common name:
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** ORF
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** formaldehyde
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** adenylate_kinase_domain-containing_protein_1
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* molecular weight:
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** nucleoside_diphosphate_kinase
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** 30.026   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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* Synonym(s):
 
* Synonym(s):
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** formalin
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** methanal
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** formol
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-2881]]
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** 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-11057]]
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** 1 ATP[c] '''+''' 1 dUDP[c] '''=>''' 1 ADP[c] '''+''' 1 dUTP[c]
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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* [[SARCOSINE-DEHYDROGENASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[KETOPANTOALDOLASE-RXN]]
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* [[Tiso_gene_17271]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18224]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9290]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16529]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17272]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_195]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''12''' reactions found over '''17''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 50-00-0
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28582 28582]
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* METABOLIGHTS : MTBLC16842
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* LIGAND-RXN:
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* DRUGBANK : DB03843
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** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=712 712]
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{{#set: common name=ORF}}
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* HMDB : HMDB01426
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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* LIGAND-CPD:
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{{#set: common name=nucleoside_diphosphate_kinase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00067 C00067]
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{{#set: ec number=EC-2.7.4.6}}
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* CHEMSPIDER:
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{{#set: gene associated=Tiso_gene_17271|Tiso_gene_18224|Tiso_gene_9290|Tiso_gene_16529|Tiso_gene_17272|Tiso_gene_195}}
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** [http://www.chemspider.com/Chemical-Structure.692.html 692]
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{{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}}
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* CHEBI:
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{{#set: reconstruction category=orthology}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16842 16842]
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{{#set: reconstruction tool=pantograph}}
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* BIGG : fald
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: smiles=[CH2]=O}}
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{{#set: reconstruction category=manual}}
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{{#set: inchi key=InChIKey=WSFSSNUMVMOOMR-UHFFFAOYSA-N}}
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{{#set: reconstruction source=primary_network}}
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{{#set: common name=formaldehyde}}
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{{#set: reconstruction category=annotation}}
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{{#set: molecular weight=30.026    }}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=formalin|methanal|formol}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: consumed by=RXN-2881}}
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{{#set: produced by=RXN-11057|DIMETHYLGLYCINE-DEHYDROGENASE-RXN|SARCOSINE-DEHYDROGENASE-RXN}}
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{{#set: consumed or produced by=KETOPANTOALDOLASE-RXN}}

Revision as of 17:16, 10 January 2018

Metabolite FORMALDEHYDE

  • smiles:
    • [CH2]=O
  • inchi key:
    • InChIKey=WSFSSNUMVMOOMR-UHFFFAOYSA-N
  • common name:
    • formaldehyde
  • molecular weight:
    • 30.026
  • Synonym(s):
    • formalin
    • methanal
    • formol

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 50-00-0
  • METABOLIGHTS : MTBLC16842
  • DRUGBANK : DB03843
  • PUBCHEM:
  • HMDB : HMDB01426
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • BIGG : fald
"CH2]=O" cannot be used as a page name in this wiki.




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