Difference between revisions of "CPD-14594"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLYCEROL-3P GLYCEROL-3P] == * smiles: ** C(OP([O-])(=O)[O-])C(O)CO * inchi key: ** InChIKey=AWU...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLYCEROL-3P GLYCEROL-3P] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** C(OP([O-])(=O)[O-])C(O)CO
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=AWUCVROLDVIAJX-GSVOUGTGSA-L
+
 
* common name:
 
* common name:
−
** sn-glycerol 3-phosphate
+
** ORF
−
* molecular weight:
+
* ec number:
−
** 170.058   
+
** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
 
* Synonym(s):
 
* Synonym(s):
−
** L-α-glycerophosphate
 
−
** L-G3P
 
−
** L-glycerol 3-phosphate
 
−
** α-glycerophosphoric acid
 
−
** α-glycerophosphate
 
−
** D-glycerol 1-phosphate
 
−
** glycerol 3-phosphate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-15045]]
+
* With identifiers:
−
* [[RXN0-5260]]
+
** 1 [[VAL-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''=>''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
* [[RXN-15740]]
+
* With common name(s):
−
* [[RXN-15745]]
+
** 1 a tRNAval[c] '''+''' 1 ATP[c] '''+''' 1 L-valine[c] '''=>''' 1 an L-valyl-[tRNAval][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
−
* [[PHOSPHAGLYPSYN-RXN]]
+
 
−
* [[RXN-1381]]
+
== Genes associated with this reaction  ==
−
== Reaction(s) known to produce the compound ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-14160]]
+
* [[Tiso_gene_8041]]
−
* [[GLYC3PDEHYDROGBIOSYN-RXN]]
+
** IN-SILICO_ANNOTATION
−
* [[RXN-14073]]
+
***EC-NUMBER
−
* [[G3PD3]]
+
** EXPERIMENTAL_ANNOTATION
−
* [[GLYCPDIESTER-RXN]]
+
***EC-NUMBER
−
* [[RXN0-5257]]
+
** [[pantograph]]-[[esiliculosus]]
−
* [[1.1.1.8-RXN]]
+
* [[Tiso_gene_1372]]
−
* [[RXN-14136]]
+
** EXPERIMENTAL_ANNOTATION
−
== Reaction(s) of unknown directionality ==
+
***EC-NUMBER
−
* [[G3PD2]]
+
** [[pantograph]]-[[esiliculosus]]
−
* [[RXN-13112]]
+
== Pathways  ==
−
* [[2.4.1.213-RXN]]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
* [[GLYCEROL-KIN-RXN]]
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* CAS : 57-03-4
+
* RHEA:
−
* METABOLIGHTS : MTBLC57597
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7048686 7048686]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
−
* HMDB : HMDB00126
+
* UNIPROT:
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P28350 P28350]
−
** [http://www.genome.jp/dbget-bin/www_bget?C00093 C00093]
+
** [http://www.uniprot.org/uniprot/P36420 P36420]
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P56000 P56000]
−
** [http://www.chemspider.com/Chemical-Structure.2939444.html 2939444]
+
** [http://www.uniprot.org/uniprot/O51680 O51680]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/O67411 O67411]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57597 57597]
+
** [http://www.uniprot.org/uniprot/O83998 O83998]
−
* BIGG : glyc3p
+
** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
−
{{#set: smiles=C(OP([O-])(=O)[O-])C(O)CO}}
+
** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
−
{{#set: inchi key=InChIKey=AWUCVROLDVIAJX-GSVOUGTGSA-L}}
+
** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
−
{{#set: common name=sn-glycerol 3-phosphate}}
+
** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
−
{{#set: molecular weight=170.058    }}
+
** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
−
{{#set: common name=L-α-glycerophosphate|L-G3P|L-glycerol 3-phosphate|α-glycerophosphoric acid|α-glycerophosphate|D-glycerol 1-phosphate|glycerol 3-phosphate}}
+
** [http://www.uniprot.org/uniprot/Q58413 Q58413]
−
{{#set: consumed by=RXN-15045|RXN0-5260|RXN-15740|RXN-15745|PHOSPHAGLYPSYN-RXN|RXN-1381}}
+
** [http://www.uniprot.org/uniprot/P43834 P43834]
−
{{#set: produced by=RXN-14160|GLYC3PDEHYDROGBIOSYN-RXN|RXN-14073|G3PD3|GLYCPDIESTER-RXN|RXN0-5257|1.1.1.8-RXN|RXN-14136}}
+
** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
−
{{#set: consumed or produced by=G3PD2|RXN-13112|2.4.1.213-RXN|GLYCEROL-KIN-RXN}}
+
** [http://www.uniprot.org/uniprot/O84304 O84304]
 +
** [http://www.uniprot.org/uniprot/P47576 P47576]
 +
** [http://www.uniprot.org/uniprot/Q94678 Q94678]
 +
** [http://www.uniprot.org/uniprot/Q04462 Q04462]
 +
** [http://www.uniprot.org/uniprot/P26640 P26640]
 +
** [http://www.uniprot.org/uniprot/Q05873 Q05873]
 +
** [http://www.uniprot.org/uniprot/Q26177 Q26177]
 +
** [http://www.uniprot.org/uniprot/P75304 P75304]
 +
** [http://www.uniprot.org/uniprot/Q49021 Q49021]
 +
** [http://www.uniprot.org/uniprot/P11931 P11931]
 +
** [http://www.uniprot.org/uniprot/P07806 P07806]
 +
** [http://www.uniprot.org/uniprot/P07118 P07118]
 +
** [http://www.uniprot.org/uniprot/O77443 O77443]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.1.1.9}}
 +
{{#set: gene associated=Tiso_gene_8041|Tiso_gene_1372}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 18:18, 10 January 2018

Reaction VALINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAval[c] + 1 ATP[c] + 1 L-valine[c] => 1 an L-valyl-[tRNAval][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-14594&oldid=17137"