Difference between revisions of "ExchangeSeed NA+"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_19933 == * left end position: ** 15 * transcription direction: ** NEGATIVE * right end position: ** 1430 * centisome position: ** 0.7857517...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] == * direction: ** REVERSIBLE * common name: ** ribulose-phosphate...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_19933 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] ==
−
* left end position:
+
* direction:
−
** 15
+
** REVERSIBLE
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** ribulose-phosphate_-3_chloroplastic
−
* right end position:
+
* ec number:
−
** 1430
+
** [http://enzyme.expasy.org/EC/5.1.3.1 EC-5.1.3.1]
−
* centisome position:
+
−
** 0.78575176   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[FUMARATE-REDUCTASE-NADH-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
−
***ec-number
+
* With common name(s):
−
== Pathways associated ==
+
** 1 D-ribulose 5-phosphate[c] '''<=>''' 1 D-xylulose 5-phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_10879]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_19140]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4754]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
== Pathways ==
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 +
* [[manual]]:
 +
** [[primary_network]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=15}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
−
{{#set: right end position=1430}}
+
* LIGAND-RXN:
−
{{#set: centisome position=0.78575176    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
−
{{#set: reaction associated=FUMARATE-REDUCTASE-NADH-RXN}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P40117 P40117]
 +
** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
 +
** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
 +
** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
 +
** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
 +
** [http://www.uniprot.org/uniprot/P45455 P45455]
 +
** [http://www.uniprot.org/uniprot/Q43157 Q43157]
 +
** [http://www.uniprot.org/uniprot/Q43843 Q43843]
 +
** [http://www.uniprot.org/uniprot/P74061 P74061]
 +
** [http://www.uniprot.org/uniprot/O23782 O23782]
 +
** [http://www.uniprot.org/uniprot/P51012 P51012]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ribulose-phosphate_-3_chloroplastic}}
 +
{{#set: ec number=EC-5.1.3.1}}
 +
{{#set: gene associated=Tiso_gene_10879|Tiso_gene_19140|Tiso_gene_4754}}
 +
{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P122-PWY|P185-PWY|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=primary_network}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:22, 10 January 2018

Reaction RIBULP3EPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ribulose-phosphate_-3_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ExchangeSeed_NA%2B&oldid=17518"