Difference between revisions of "R311-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=L-CYSTATHIONINE L-CYSTATHIONINE] == * smiles: ** C(SCC(C([O-])=O)[N+])CC([N+])C([O-])=O * inchi...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11213 RXN-11213] == * direction: ** LEFT-TO-RIGHT * common name: ** methylmalonate-semialdehyde...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=L-CYSTATHIONINE L-CYSTATHIONINE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11213 RXN-11213] ==
−
* smiles:
+
* direction:
−
** C(SCC(C([O-])=O)[N+])CC([N+])C([O-])=O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=ILRYLPWNYFXEMH-WHFBIAKZSA-N
+
 
* common name:
 
* common name:
−
** L-cystathionine
+
** methylmalonate-semialdehyde_dehydrogenase
−
* molecular weight:
+
* ec number:
−
** 222.259   
+
** [http://enzyme.expasy.org/EC/1.2.1.27 EC-1.2.1.27]
 
* Synonym(s):
 
* Synonym(s):
−
** cystathionine
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-15130]]
+
* With identifiers:
−
* [[RXN-15131]]
+
** 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CH3-MALONATE-S-ALD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PROPIONYL-COA]][c] '''+''' 1 [[HCO3]][c]
−
* [[CYSTATHIONINE-BETA-LYASE-RXN]]
+
* With common name(s):
−
* [[RXN-14048]]
+
** 1 H2O[c] '''+''' 1 NAD+[c] '''+''' 1 coenzyme A[c] '''+''' 1 (S)-methylmalonate-semialdehyde[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 propanoyl-CoA[c] '''+''' 1 hydrogencarbonate[c]
−
== Reaction(s) known to produce the compound ==
+
 
−
== Reaction(s) of unknown directionality ==
+
== Genes associated with this reaction  ==
−
* [[O-SUCCHOMOSERLYASE-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[CYSTATHIONINE-BETA-SYNTHASE-RXN]]
+
* [[Tiso_gene_11323]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways  ==
 +
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
 +
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
* CAS : 56-88-2
+
* RHEA:
−
* METABOLIGHTS : MTBLC58161
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20804 20804]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25243997 25243997]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00935 R00935]
−
* HMDB : HMDB00099
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* LIGAND-CPD:
+
{{#set: common name=methylmalonate-semialdehyde_dehydrogenase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C02291 C02291]
+
{{#set: ec number=EC-1.2.1.27}}
−
* CHEBI:
+
{{#set: gene associated=Tiso_gene_11323}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58161 58161]
+
{{#set: in pathway=VALDEG-PWY}}
−
* BIGG : cyst__L
+
{{#set: reconstruction category=orthology}}
−
{{#set: smiles=C(SCC(C([O-])=O)[N+])CC([N+])C([O-])=O}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: inchi key=InChIKey=ILRYLPWNYFXEMH-WHFBIAKZSA-N}}
+
{{#set: reconstruction source=esiliculosus}}
−
{{#set: common name=L-cystathionine}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: molecular weight=222.259    }}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: common name=cystathionine}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
−
{{#set: consumed by=RXN-15130|RXN-15131|CYSTATHIONINE-BETA-LYASE-RXN|RXN-14048}}
+
−
{{#set: consumed or produced by=O-SUCCHOMOSERLYASE-RXN|CYSTATHIONINE-BETA-SYNTHASE-RXN}}
+

Revision as of 17:23, 10 January 2018

Reaction RXN-11213

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methylmalonate-semialdehyde_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 NAD+[c] + 1 coenzyme A[c] + 1 (S)-methylmalonate-semialdehyde[c] => 1 NADH[c] + 1 H+[c] + 1 propanoyl-CoA[c] + 1 hydrogencarbonate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • VALDEG-PWY, L-valine degradation I: VALDEG-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R311-RXN&oldid=17578"