Difference between revisions of "CPD-5162"

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(Created page with "Category:Gene == Gene Tiso_gene_10462 == * left end position: ** 7466 * transcription direction: ** POSITIVE * right end position: ** 8323 * centisome position: ** 87.5982...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5180 RXN0-5180] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2.5...")
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[[Category:Gene]]
+
[[Category:Reaction]]
== Gene Tiso_gene_10462 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5180 RXN0-5180] ==
* left end position:
+
* direction:
** 7466
+
** REVERSIBLE
* transcription direction:
+
* ec number:
** POSITIVE
+
** [http://enzyme.expasy.org/EC/2.5.1 EC-2.5.1]
* right end position:
+
** 8323
+
* centisome position:
+
** 87.59827   
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
+
== Reaction Formula ==
* [[URACIL-PRIBOSYLTRANS-RXN]]
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* With identifiers:
** in-silico_annotation
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''<=>''' 1 [[CPD0-1028]][c] '''+''' 1 [[PPI]][c]
***automated-name-match
+
* With common name(s):
 +
** 1 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''<=>''' 1 2-cis,6-trans,10-trans-geranylgeranyl diphosphate[c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_2848]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10317]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8531]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_11582]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_18201]]
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
** [[pantograph]]-[[creinhardtii]]
+
== Pathways  ==
== Pathways associated ==
+
== Reconstruction information  ==
* [[PWY-7183]]
+
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 
== External links  ==
 
== External links  ==
{{#set: left end position=7466}}
+
* RHEA:
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31282 31282]
{{#set: right end position=8323}}
+
* LIGAND-RXN:
{{#set: centisome position=87.59827    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05555 R05555]
{{#set: reaction associated=URACIL-PRIBOSYLTRANS-RXN}}
+
{{#set: direction=REVERSIBLE}}
{{#set: pathway associated=PWY-7183}}
+
{{#set: ec number=EC-2.5.1}}
 +
{{#set: gene associated=Tiso_gene_2848|Tiso_gene_10317|Tiso_gene_8531|Tiso_gene_11582|Tiso_gene_18201}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=esiliculosus|athaliana}}

Revision as of 17:25, 10 January 2018

Reaction RXN0-5180

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 (2E,6E)-farnesyl diphosphate[c] <=> 1 2-cis,6-trans,10-trans-geranylgeranyl diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links