Difference between revisions of "UDPGALor"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RME295 RME295] == * direction: ** REVERSIBLE * common name: ** RME295 * Synonym(s): == Reaction Fo...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * ec num...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RME295 RME295] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
+
* ec number:
−
** RME295
+
** [http://enzyme.expasy.org/EC/2.3.1.9 EC-2.3.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[NAD-P-OR-NOP]][c] '''<=>''' 1.0 [[NAD]][c]
+
** 2 [[ACETYL-COA]][c] '''<=>''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 NAD(P)+[c] '''<=>''' 1.0 NAD+[c]
+
** 2 acetyl-CoA[c] '''<=>''' 1 acetoacetyl-CoA[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_15327]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_16181]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_17451]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate: [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY]
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
 +
** '''2''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA): [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DEG-PWY ACETOACETATE-DEG-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 +
** '''5''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 +
** '''5''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* [[orthology]]:
−
** [[primary_network]]
+
** [[pantograph]]:
 +
*** [[creinhardtii]]
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21036 21036]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6]
 +
** [http://www.uniprot.org/uniprot/P41338 P41338]
 +
** [http://www.uniprot.org/uniprot/P45362 P45362]
 +
** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1]
 +
** [http://www.uniprot.org/uniprot/P45359 P45359]
 +
** [http://www.uniprot.org/uniprot/P24752 P24752]
 +
** [http://www.uniprot.org/uniprot/Q12598 Q12598]
 +
** [http://www.uniprot.org/uniprot/P45369 P45369]
 +
** [http://www.uniprot.org/uniprot/P46707 P46707]
 +
** [http://www.uniprot.org/uniprot/P73825 P73825]
 +
** [http://www.uniprot.org/uniprot/Q43637 Q43637]
 +
** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6]
 +
** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4]
 +
** [http://www.uniprot.org/uniprot/P77852 P77852]
 +
** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81]
 +
** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9]
 +
** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0]
 +
** [http://www.uniprot.org/uniprot/P14611 P14611]
 +
** [http://www.uniprot.org/uniprot/P07097 P07097]
 +
** [http://www.uniprot.org/uniprot/P17764 P17764]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=RME295}}
+
{{#set: ec number=EC-2.3.1.9}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_15327|Tiso_gene_16181|Tiso_gene_17451}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-7778|PWY-7779|PWY-6588|PWY-6174|PWY-5789|PWY-6876|CENTFERM-PWY|PWY-7391|PWY-5741|PWY1-3|ACETOACETATE-DEG-PWY|PWY66-367|PWY-7216|PWY-922|PWY66-368|PWY-7401|PWY-6863|PWY-7524}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}

Revision as of 17:25, 10 January 2018

Reaction ACETYL-COA-ACETYLTRANSFER-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 acetyl-CoA[c] <=> 1 acetoacetyl-CoA[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate): P162-PWY
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5177, glutaryl-CoA degradation: PWY-5177
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 4 reactions found over 8 reactions in the full pathway
  • P163-PWY, L-lysine fermentation to acetate and butanoate: P163-PWY
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered): PWY-6883
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5676, acetyl-CoA fermentation to butanoate II: PWY-5676
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7778, 2-methylpropene degradation: PWY-7778
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-7779, methyl tert-butyl ether degradation: PWY-7779
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-6588, pyruvate fermentation to acetone: PWY-6588
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 8 reactions found over 16 reactions in the full pathway
  • PWY-6876, isopropanol biosynthesis (engineered): PWY-6876
    • 2 reactions found over 5 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5741, ethylmalonyl-CoA pathway: PWY-5741
    • 2 reactions found over 11 reactions in the full pathway
  • PWY1-3, polyhydroxybutanoate biosynthesis: PWY1-3
    • 2 reactions found over 3 reactions in the full pathway
  • ACETOACETATE-DEG-PWY, acetoacetate degradation (to acetyl CoA): ACETOACETATE-DEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY66-367, ketogenesis: PWY66-367
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7216, (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): PWY-7216
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-368, ketolysis: PWY66-368
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate): PWY-7401
    • 5 reactions found over 17 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 5 reactions found over 11 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UDPGALor&oldid=17749"