Difference between revisions of "2.4.1.198-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-ketoacyl-_thiolase ** ace...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** d-3-phosphoglycerate_dehydrogenase
+
** 3-ketoacyl-_thiolase
−
** ORF
+
** acetyl-_c-acetyltransferase
 +
** thiolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[BUTYRYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[K-HEXANOYL-COA]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 H+[c]
+
** 1 butanoyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 3-oxohexanoyl-CoA[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18904]]
+
* [[Tiso_gene_10116]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** EXPERIMENTAL_ANNOTATION
−
* [[Tiso_gene_17123]]
+
***EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_15327]]
−
* [[Tiso_gene_15686]]
+
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_6223]]
+
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_17451]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_6224]]
+
* [[Tiso_gene_3855]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15687]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
* [[Tiso_gene_16181]]
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[athaliana]]
−
** [[pantograph]]-[[synechocystis]]
 
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_3856]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
+
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[creinhardtii]]
 
*** [[creinhardtii]]
−
*** [[synechocystis]]
 
−
*** [[esiliculosus]]
 
 
*** [[athaliana]]
 
*** [[athaliana]]
−
* [[manual]]:
+
*** [[esiliculosus]]
−
** [[primary_network]]
+
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
Line 61: Line 63:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31113 31113]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01177 R01177]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
+
{{#set: common name=3-ketoacyl-_thiolase}}
−
** [http://www.uniprot.org/uniprot/P43885 P43885]
+
{{#set: common name=acetyl-_c-acetyltransferase}}
−
** [http://www.uniprot.org/uniprot/P35136 P35136]
+
{{#set: common name=thiolase}}
−
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
+
{{#set: ec number=EC-2.3.1.16}}
−
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
+
{{#set: gene associated=Tiso_gene_10116|Tiso_gene_15327|Tiso_gene_17451|Tiso_gene_3855|Tiso_gene_16181|Tiso_gene_3856}}
−
** [http://www.uniprot.org/uniprot/P40510 P40510]
+
{{#set: in pathway=PWY-6863}}
−
** [http://www.uniprot.org/uniprot/P40054 P40054]
+
−
** [http://www.uniprot.org/uniprot/O49485 O49485]
+
−
** [http://www.uniprot.org/uniprot/P87228 P87228]
+
−
** [http://www.uniprot.org/uniprot/O04130 O04130]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.1.1.95}}
+
−
{{#set: gene associated=Tiso_gene_18904|Tiso_gene_17123|Tiso_gene_15686|Tiso_gene_6223|Tiso_gene_6224|Tiso_gene_15687}}
+
−
{{#set: in pathway=SERSYN-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:26, 10 January 2018

Reaction RXN-12565

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-ketoacyl-_thiolase
    • acetyl-_c-acetyltransferase
    • thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 5 reactions found over 11 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2.4.1.198-RXN&oldid=17778"