Difference between revisions of "Charged-ILE-tRNAs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-83 RXN66-83] == * direction: ** LEFT-TO-RIGHT * common name: ** exostosin_family_protein * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10855 RXN-10855] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-83 RXN66-83] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10855 RXN-10855] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** exostosin_family_protein
+
** polyketide_synthase
−
* ec number:
+
** ORF
−
** [http://enzyme.expasy.org/EC/2.4.1.17 EC-2.4.1.17]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP-GLUCURONATE]][c] '''+''' 1 [[NICOTINE]][c] '''=>''' 1 [[CPD-2744]][c] '''+''' 1 [[UDP]][c]
+
** 1 [[NAD-P-OR-NOP]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[CPD-7682]][c] '''=>''' 1 [[CPD-468]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-α-D-glucuronate[c] '''+''' 1 (S)-nicotine[c] '''=>''' 1 nicotine-glucuronide[c] '''+''' 1 UDP[c]
+
** 1 NAD(P)+[c] '''+''' 2 H2O[c] '''+''' 1 (S)-2,3,4,5-tetrahydropiperidine-2-carboxylate[c] '''=>''' 1 L-2-aminoadipate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14141]]
+
* [[Tiso_gene_6562]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_14140]]
+
* [[Tiso_gene_5425]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5424]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_16719]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6563]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-201]], nicotine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-201 PWY66-201]
+
* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
−
** '''3''' reactions found over '''17''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[annotation]]:
 
* [[annotation]]:
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== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=exostosin_family_protein}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-2.4.1.17}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_14141|Tiso_gene_14140}}
+
{{#set: gene associated=Tiso_gene_6562|Tiso_gene_5425|Tiso_gene_5424|Tiso_gene_16719|Tiso_gene_6563}}
−
{{#set: in pathway=PWY66-201}}
+
{{#set: in pathway=PWY66-425}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction source=in-silico_annotation}}
 
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:29, 10 January 2018

Reaction RXN-10855

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD(P)+[c] + 2 H2O[c] + 1 (S)-2,3,4,5-tetrahydropiperidine-2-carboxylate[c] => 1 L-2-aminoadipate[c] + 1 NAD(P)H[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-425, L-lysine degradation II (L-pipecolate pathway): PWY66-425
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Charged-ILE-tRNAs&oldid=18065"