Difference between revisions of "11Z-3-oxo-icos-11-enoyl-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-ARABINOSE-4-EPIMERASE-RXN UDP-ARABINOSE-4-EPIMERASE-RXN] == * direction: ** REVERSIBLE * common...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxidas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-ARABINOSE-4-EPIMERASE-RXN UDP-ARABINOSE-4-EPIMERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HEMN-RXN HEMN-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** udp-galactopyranose_mutase
+
** coproporphyrinogen-iii_oxidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.3.5 EC-5.1.3.5]
+
** [http://enzyme.expasy.org/EC/1.3.98.3 EC-1.3.98.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-12513]][c] '''<=>''' 1 [[UDP-D-XYLOSE]][c]
+
** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[CH33ADO]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-&beta;-L-arabinopyranose[c] '''<=>''' 1 UDP-&alpha;-D-xylose[c]
+
** 1 coproporphyrinogen III[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 5'-deoxyadenosine[c] '''+''' 2 CO2[c] '''+''' 2 L-methionine[c] '''+''' 1 protoporphyrinogen IX[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15395]]
+
* [[Tiso_gene_4004]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5577]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13364]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13365]]
 +
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_18066]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-63]], UDP-L-arabinose biosynthesis I (from UDP-xylose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-63 PWY-63]
+
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[synechocystis]]
 +
*** [[esiliculosus]]
 +
*** [[athaliana]]
 
* [[annotation]]:
 
* [[annotation]]:
 
** [[pathwaytools]]:
 
** [[pathwaytools]]:
−
*** [[experimental_annotation]]
 
 
*** [[in-silico_annotation]]
 
*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11320 11320]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15425 15425]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01473 R01473]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=udp-galactopyranose_mutase}}
+
{{#set: common name=coproporphyrinogen-iii_oxidase}}
−
{{#set: ec number=EC-5.1.3.5}}
+
{{#set: ec number=EC-1.3.98.3}}
−
{{#set: gene associated=Tiso_gene_15395}}
+
{{#set: gene associated=Tiso_gene_4004|Tiso_gene_5577|Tiso_gene_13364|Tiso_gene_13365|Tiso_gene_18066}}
−
{{#set: in pathway=PWY-63}}
+
{{#set: in pathway=PWY-5531|HEMESYN2-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=in-silico_annotation}}

Revision as of 17:38, 10 January 2018

Reaction HEMN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen-iii_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






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