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| − | [[Category:Reaction]] | + | [[Category:Metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Guanine34-in-tRNAs Guanine34-in-tRNAs] == |
| − | * direction:
| + | |
| − | ** LEFT-TO-RIGHT
| + | |
| | * common name: | | * common name: |
| − | ** protoporphyrinogen_ix_oxidase_usually_abbreviated | + | ** a guanine34 in tRNA |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
| − | * With identifiers:
| + | * [[RXN0-1321]] |
| − | ** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
| + | == Reaction(s) known to produce the compound == |
| − | * With common name(s):
| + | == Reaction(s) of unknown directionality == |
| − | ** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
| + | * [[QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN]] |
| − | | + | |
| − | == Genes associated with this reaction == | + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_11986]] | + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | * [[Tiso_gene_15401]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | == Pathways == | + | |
| − | * [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
| + | |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | * [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
| + | |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
| + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159] | + | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[synechocystis]]
| + | |
| − | *** [[athaliana]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: common name=a guanine34 in tRNA}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
| + | {{#set: consumed by=RXN0-1321}} |
| − | * LIGAND-RXN:
| + | {{#set: consumed or produced by=QUEUOSINE-TRNA-RIBOSYLTRANSFERASE-RXN}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
| + | |
| − | * UNIPROT:
| + | |
| − | ** [http://www.uniprot.org/uniprot/P50336 P50336]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q49404 Q49404]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P51175 P51175]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24163 O24163]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24164 O24164]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O64384 O64384]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O64385 O64385]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}}
| + | |
| − | {{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}} | + | |
| − | {{#set: ec number=EC-1.3.3.4}} | + | |
| − | {{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}} | + | |
| − | {{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
| + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
