Difference between revisions of "Cis-cis-D7-19-3-hydroxyC38-2-ACPs"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] == * smiles: ** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] == * direction: ** REVERSIBL...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] ==
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* smiles:
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* direction:
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** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
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** REVERSIBLE
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* inchi key:
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** InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
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* common name:
 
* common name:
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** (2E,6E)-farnesyl diphosphate
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** branched-chain_amino_acid_aminotransferase
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* molecular weight:
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* ec number:
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** 379.306   
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** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
 
* Synonym(s):
 
* Synonym(s):
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** 2-trans,6-trans-farnesyl diphosphate
 
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** FPP
 
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** trans, trans-farnesyl diphosphate
 
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** farnesyl-PP
 
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** farnesyl pyrophosphate
 
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** ω,E,E-farnesyl diphosphate
 
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** farnesyl diphosphate
 
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** (E,E)-farnesyl diphosphate
 
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** all-trans-farnesyl diphosphate
 
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** C15-PP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-8999]]
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* With identifiers:
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* [[GGPS]]
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** 1 [[VAL]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c]
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 L-valine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-methyl-2-oxobutanoate[c]
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* [[FPPSYN-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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* [[2.5.1.58-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN0-5180]]
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* [[Tiso_gene_18403]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_14984]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-VALINESYN-PWY ALANINE-VALINESYN-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 13058-04-3
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* RHEA:
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* METABOLIGHTS : MTBLC175763
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24813 24813]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15983959 15983959]
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** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
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* KNAPSACK : C00007268
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* UNIPROT:
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* HMDB : HMDB00961
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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** [http://www.genome.jp/dbget-bin/www_bget?C00448 C00448]
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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** [http://www.chemspider.com/Chemical-Structure.11633047.html 11633047]
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=175763 175763]
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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* BIGG : frdp
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{{#set: direction=REVERSIBLE}}
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{{#set: smiles=CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C}}
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{{#set: common name=branched-chain_amino_acid_aminotransferase}}
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{{#set: inchi key=InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K}}
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{{#set: ec number=EC-2.6.1.42}}
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{{#set: common name=(2E,6E)-farnesyl diphosphate}}
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{{#set: gene associated=Tiso_gene_18403|Tiso_gene_14984}}
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{{#set: molecular weight=379.306    }}
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{{#set: in pathway=VALSYN-PWY|VALDEG-PWY|ALANINE-VALINESYN-PWY|PWY-5057}}
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{{#set: common name=2-trans,6-trans-farnesyl diphosphate|FPP|trans, trans-farnesyl diphosphate|farnesyl-PP|farnesyl pyrophosphate|&omega;,E,E-farnesyl diphosphate|farnesyl diphosphate|(E,E)-farnesyl diphosphate|all-trans-farnesyl diphosphate|C15-PP}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: consumed by=RXN-8999|GGPS|FARNESYLTRANSTRANSFERASE-RXN}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: produced by=FPPSYN-RXN}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: consumed or produced by=2.5.1.58-RXN|RXN0-5180}}
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Revision as of 17:52, 18 March 2018

Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • branched-chain_amino_acid_aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-valine[c] + 1 2-oxoglutarate[c] <=> 1 L-glutamate[c] + 1 3-methyl-2-oxobutanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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