Difference between revisions of "Ribonucleosides"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MRNA-GUANYLYLTRANSFERASE-RXN MRNA-GUANYLYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MRNA-GUANYLYLTRANSFERASE-RXN MRNA-GUANYLYLTRANSFERASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** mrna_capping_enzyme_alpha
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** 4-hydroxybenzoate biosynthesis V
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** snurportin-1
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.7.50 EC-2.7.7.50]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
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** 2 [[PROTON]][c] '''+''' 1 [[CPD-8630]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[G5-pppR-mRNAs]][c] '''+''' 1 [[PPI]][c]
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 2 H+[c] '''+''' 1 a 5'-diphospho-purine-[mRNA][c] '''+''' 1 GTP[c] '''=>''' 1 a 5'-(5'-triphosphoguanosine)-purine-[mRNA][c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_12275]]
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*** [[Tiso_gene_14183]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_7172]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[RXN-11244]]
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***EC-NUMBER
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** 3 associated gene(s):
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* [[Tiso_gene_7173]]
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*** [[Tiso_gene_16145]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_14262]]
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***EC-NUMBER
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*** [[Tiso_gene_6885]]
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* [[Tiso_gene_2229]]
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** 1 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-11245]]
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** [[pantograph]]-[[esiliculosus]]
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** 6 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_18838]]
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* [[PWY-7375]], mRNA capping I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7375 PWY-7375]
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*** [[Tiso_gene_14262]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_5857]]
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== Reconstruction information  ==
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*** [[Tiso_gene_14026]]
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* [[orthology]]:
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*** [[Tiso_gene_14027]]
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** [[pantograph]]:
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*** [[Tiso_gene_18839]]
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*** [[esiliculosus]]
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** 3 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-experimental_annotation]]
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** [[pathwaytools]]:
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*** [[annotation-in-silico_annotation]]
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*** [[in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11246]]
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** 5 associated gene(s):
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*** [[Tiso_gene_3856]]
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*** [[Tiso_gene_10116]]
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*** [[Tiso_gene_3855]]
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*** [[Tiso_gene_15327]]
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*** [[Tiso_gene_17451]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.23-RXN 3.1.2.23-RXN]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03828 R03828]
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{{#set: common name=4-hydroxybenzoate biosynthesis V}}
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* UNIPROT:
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/P32094 P32094]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P33057 P33057]
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{{#set: completion rate=80.0}}
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** [http://www.uniprot.org/uniprot/O60942 O60942]
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** [http://www.uniprot.org/uniprot/P04298 P04298]
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** [http://www.uniprot.org/uniprot/P04318 P04318]
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** [http://www.uniprot.org/uniprot/P25950 P25950]
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** [http://www.uniprot.org/uniprot/P20979 P20979]
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** [http://www.uniprot.org/uniprot/P11079 P11079]
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** [http://www.uniprot.org/uniprot/Q01159 Q01159]
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** [http://www.uniprot.org/uniprot/Q84424 Q84424]
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** [http://www.uniprot.org/uniprot/Q98257 Q98257]
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** [http://www.uniprot.org/uniprot/Q98268 Q98268]
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** [http://www.uniprot.org/uniprot/P40997 P40997]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=mrna_capping_enzyme_alpha}}
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{{#set: common name=snurportin-1}}
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{{#set: ec number=EC-2.7.7.50}}
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{{#set: gene associated=Tiso_gene_7172|Tiso_gene_7173|Tiso_gene_2229}}
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{{#set: in pathway=PWY-7375}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 17:52, 18 March 2018

Pathway PWY-6435

  • taxonomic range:
  • common name:
    • 4-hydroxybenzoate biosynthesis V
  • Synonym(s):

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Ribonucleosides&oldid=20308"