Difference between revisions of "NICOTINATE NUCLEOTIDE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** serine_palmitoyltransferase
+
** all-trans retinyl-ester hydrolase
 +
** ORF
 +
** serine_esterase
 +
** alpha_beta_hydrolase
 +
** sialate_o-acetylesterase-like_protein
 +
** lysophospholipase
 +
** protein_chloroplastic
 +
** alpha_beta_hydrolase_fold_protein
 +
** para-nitrobenzyl_esterase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
+
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[All-trans-Retinyl-Esters]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CPD-13524]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-serine[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 coenzyme A[c]
+
** 1 H2O[c] '''+''' 1 an all-trans-retinyl ester[c] '''=>''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c] '''+''' 1 all-trans-retinol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10992]]
+
* [[Tiso_gene_16518]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_11351]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_1537]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
***AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[athaliana]]
 
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1922]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4606]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17029]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1538]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_9429]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19778]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4650]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_12686]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2556]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10066]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
+
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
+
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
* [[annotation]]:
+
** Source: [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P25045 P25045]
 
−
** [http://www.uniprot.org/uniprot/O15270 O15270]
 
−
** [http://www.uniprot.org/uniprot/P48241 P48241]
 
−
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 
−
** [http://www.uniprot.org/uniprot/P40970 P40970]
 
−
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 
−
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 
−
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=serine_palmitoyltransferase}}
+
{{#set: common name=all-trans retinyl-ester hydrolase}}
−
{{#set: ec number=EC-2.3.1.50}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_10992}}
+
{{#set: common name=serine_esterase}}
−
{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
+
{{#set: common name=alpha_beta_hydrolase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=sialate_o-acetylesterase-like_protein}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=lysophospholipase}}
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+
{{#set: common name=protein_chloroplastic}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: common name=para-nitrobenzyl_esterase}}
−
{{#set: reconstruction source=in-silico_annotation}}
+
{{#set: ec number=EC-3.1.1.1}}
 +
{{#set: gene associated=Tiso_gene_16518|Tiso_gene_11351|Tiso_gene_1537|Tiso_gene_1922|Tiso_gene_4606|Tiso_gene_17029|Tiso_gene_1538|Tiso_gene_9429|Tiso_gene_19778|Tiso_gene_4650|Tiso_gene_12686|Tiso_gene_2556|Tiso_gene_10066}}
 +
{{#set: in pathway=PWY-6857}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:52, 18 March 2018

Reaction RXN-12575

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • all-trans retinyl-ester hydrolase
    • ORF
    • serine_esterase
    • alpha_beta_hydrolase
    • sialate_o-acetylesterase-like_protein
    • lysophospholipase
    • protein_chloroplastic
    • alpha_beta_hydrolase_fold_protein
    • para-nitrobenzyl_esterase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=NICOTINATE_NUCLEOTIDE&oldid=20328"