Difference between revisions of "XANTHOSINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.117-RXN 2.4.1.117-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** udp-glucose--undeca...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.117-RXN 2.4.1.117-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** udp-glucose--undecaprenyl-phosphate_glucosyltransferase
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** tRNA charging
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.1.117 EC-2.4.1.117]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''21''' reactions found over '''21''' reactions in the full pathway
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** 1 [[DOLICHOLP]][c] '''+''' 1 [[CPD-12575]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[CPD-166]][c]
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* [[ALANINE--TRNA-LIGASE-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 a dolichyl phosphate[c] '''+''' 1 UDP-α-D-glucose[c] '''=>''' 1 UDP[c] '''+''' 1 a dolichyl β-D-glucosyl phosphate[c]
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*** [[Tiso_gene_2298]]
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*** [[Tiso_gene_3249]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18607]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_18609]]
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* [[Tiso_gene_8160]]
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*** [[Tiso_gene_19573]]
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** IN-SILICO_ANNOTATION
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** 3 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[ARGININE--TRNA-LIGASE-RXN]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** 2 associated gene(s):
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** '''19''' reactions found over '''19''' reactions in the full pathway
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*** [[Tiso_gene_12997]]
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== Reconstruction information  ==
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*** [[Tiso_gene_16360]]
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* [[orthology]]:
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** 3 reconstruction source(s) associated:
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** [[pantograph]]:
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*** [[annotation-in-silico_annotation]]
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*** [[athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[esiliculosus]]
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*** [[orthology-esiliculosus]]
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* [[annotation]]:
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* [[ASPARAGINE--TRNA-LIGASE-RXN]]
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** [[pathwaytools]]:
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** 5 associated gene(s):
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_9303]]
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*** [[Tiso_gene_9304]]
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*** [[Tiso_gene_9908]]
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*** [[Tiso_gene_13908]]
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*** [[Tiso_gene_6065]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[ASPARTATE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_17185]]
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*** [[Tiso_gene_7126]]
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*** [[Tiso_gene_13081]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[CYSTEINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_10881]]
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*** [[Tiso_gene_17657]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[GLURS-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_5379]]
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*** [[Tiso_gene_5046]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[GLUTAMINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_5915]]
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*** [[Tiso_gene_11124]]
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*** [[Tiso_gene_7596]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[GLYCINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_14743]]
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*** [[Tiso_gene_14742]]
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*** [[Tiso_gene_3788]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[HISTIDINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_12634]]
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*** [[Tiso_gene_13414]]
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*** [[Tiso_gene_8798]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_12496]]
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*** [[Tiso_gene_11779]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[LEUCINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11524]]
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*** [[Tiso_gene_15439]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
 +
* [[LYSINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6705]]
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*** [[Tiso_gene_16635]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[METHIONINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_284]]
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*** [[Tiso_gene_406]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_16467]]
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*** [[Tiso_gene_4232]]
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*** [[Tiso_gene_16650]]
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*** [[Tiso_gene_1625]]
 +
** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
 +
* [[PROLINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11974]]
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*** [[Tiso_gene_14791]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-16165]]
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** 2 associated gene(s):
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*** [[Tiso_gene_406]]
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*** [[Tiso_gene_284]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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* [[SERINE--TRNA-LIGASE-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_1682]]
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*** [[Tiso_gene_10015]]
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*** [[Tiso_gene_1684]]
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*** [[Tiso_gene_587]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[THREONINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_13142]]
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*** [[Tiso_gene_4406]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_14318]]
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*** [[Tiso_gene_14319]]
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*** [[Tiso_gene_12988]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TYROSINE--TRNA-LIGASE-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_4174]]
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*** [[Tiso_gene_12171]]
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*** [[Tiso_gene_10378]]
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*** [[Tiso_gene_4175]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[VALINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_1372]]
 +
*** [[Tiso_gene_8041]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15401 15401]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01005 R01005]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P40350 P40350]
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{{#set: common name=tRNA charging}}
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** [http://www.uniprot.org/uniprot/Q9UUT0 Q9UUT0]
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{{#set: reaction found=21}}
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** [http://www.uniprot.org/uniprot/Q9Y673 Q9Y673]
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{{#set: total reaction=21}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=100.0}}
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{{#set: common name=udp-glucose--undecaprenyl-phosphate_glucosyltransferase}}
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−
{{#set: ec number=EC-2.4.1.117}}
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−
{{#set: gene associated=Tiso_gene_8160}}
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−
{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=athaliana|esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 17:54, 18 March 2018

Pathway TRNA-CHARGING-PWY

Reaction(s) found

21 reactions found over 21 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=XANTHOSINE&oldid=20492"