Difference between revisions of "PHE-tRNAs"

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(Created page with "Category:Gene == Gene Tiso_gene_8860 == * left end position: ** 7937 * transcription direction: ** POSITIVE * right end position: ** 9448 * centisome position: ** 80.83308...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_8860 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
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* left end position:
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* direction:
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** 7937
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Naringenin chalcone isomerase
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* right end position:
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** atp-dependent_rna_helicase_dhx30-like
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** 9448
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
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** 80.83308   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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***ec-number
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* With common name(s):
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-12195]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_9838]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-12196]]
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* [[Tiso_gene_13414]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN0-5462]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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***ec-number
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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* [[PWY-7184]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7198]]
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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* [[PWY-6545]]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7210]]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=7937}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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{{#set: right end position=9448}}
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* UNIPROT:
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{{#set: centisome position=80.83308    }}
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Naringenin chalcone isomerase}}
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{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
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{{#set: ec number=EC-5.5.1.6}}
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{{#set: gene associated=Tiso_gene_9838|Tiso_gene_13414}}
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{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:54, 18 March 2018

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
    • atp-dependent_rna_helicase_dhx30-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 2 reactions found over 4 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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