Difference between revisions of "S-2-Hydroxyacids1"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIOTINLIG-RXN BIOTINLIG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BIOTINLIG-RXN BIOTINLIG-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
 
* common name:
 
* common name:
−
** methylerythritol phosphate pathway II
+
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.3.4.15 EC-6.3.4.15]
 
* Synonym(s):
 
* Synonym(s):
−
** nonmevalonate isopentenyl diphosphate biosynthesis
 
−
** methylerythritol phosphate degradation
 
−
** MEP degradation
 
−
** deoxyxylulose phosphate pathway
 
−
** DOXP pathway
 
−
** Rohmer pathway
 
−
** isopentenyl diphosphate biosynthesis -- mevalonate-independent
 
−
** nonmevalonate isoprenoid pathway
 
−
** MEP pathway
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''9''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[2.7.1.148-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[BCCP-monomers]][c] '''+''' 1 [[BIOTIN]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[BCCP-biotin-monomers]][c]
−
* [[2.7.7.60-RXN]]
+
* With common name(s):
−
* [[DXPREDISOM-RXN]]
+
** 1 ATP[c] '''+''' 1 a [biotin-carboxyl-carrier protein monomer][c] '''+''' 1 biotin[c] '''=>''' 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 a biotinylated [BCCP monomer][c]
−
* [[DXS-RXN]]
+
 
−
* [[IPPISOM-RXN]]
+
== Genes associated with this reaction  ==
−
* [[ISPH2-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN0-302]]
+
* [[Tiso_gene_14184]]
−
* [[RXN0-882]]
+
** IN-SILICO_ANNOTATION
−
* [[RXN0-884]]
+
***EC-NUMBER
−
== Reaction(s) not found ==
+
* [[Tiso_gene_8713]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17216]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-5794}}
+
* UNIPROT:
−
{{#set: taxonomic range=TAX-1117}}
+
** [http://www.uniprot.org/uniprot/P06709 P06709]
−
{{#set: taxonomic range=TAX-33090}}
+
** [http://www.uniprot.org/uniprot/Q9PJ27 Q9PJ27]
−
{{#set: common name=methylerythritol phosphate pathway II}}
+
** [http://www.uniprot.org/uniprot/Q9CEQ6 Q9CEQ6]
−
{{#set: common name=nonmevalonate isopentenyl diphosphate biosynthesis|methylerythritol phosphate degradation|MEP degradation|deoxyxylulose phosphate pathway|DOXP pathway|Rohmer pathway|isopentenyl diphosphate biosynthesis -- mevalonate-independent|nonmevalonate isoprenoid pathway|MEP pathway}}
+
** [http://www.uniprot.org/uniprot/Q9CED9 Q9CED9]
−
{{#set: reaction found=9}}
+
** [http://www.uniprot.org/uniprot/Q9JWI7 Q9JWI7]
−
{{#set: reaction not found=9}}
+
** [http://www.uniprot.org/uniprot/P48445 P48445]
−
{{#set: completion rate=100.0}}
+
** [http://www.uniprot.org/uniprot/P72816 P72816]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.3.4.15}}
 +
{{#set: gene associated=Tiso_gene_14184|Tiso_gene_8713|Tiso_gene_17216}}
 +
{{#set: in pathway=PWY0-1264}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:54, 18 March 2018

Reaction BIOTINLIG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a [biotin-carboxyl-carrier protein monomer][c] + 1 biotin[c] => 1 H+[c] + 1 AMP[c] + 1 diphosphate[c] + 1 a biotinylated [BCCP monomer][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1264, biotin-carboxyl carrier protein assembly: PWY0-1264
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=S-2-Hydroxyacids1&oldid=20559"