Difference between revisions of "Tiso gene 12629"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9532 RXN-9532] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-dodecanoyl-[acyl-carrie...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9532 RXN-9532] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** 3-oxo-dodecanoyl-[acyl-carrier protein] reductase
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** L-selenocysteine biosynthesis II (archaea and eukaryotes)
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** polyketide_synthase
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** 3-oxoacyl-(acyl-carrier-protein)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''4''' reactions in the full pathway
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** 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxydodecanoyl-ACPs]][c]
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* [[2.7.9.3-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a 3-oxo-dodecanoyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxydodecanoyl-[acp][c]
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*** [[Tiso_gene_5669]]
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*** [[Tiso_gene_5668]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_14608]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_500]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-10038]]
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* [[Tiso_gene_135]]
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** 0 associated gene:
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** IN-SILICO_ANNOTATION
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_9885]]
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* [[RXN-10039]]
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** EXPERIMENTAL_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_16385]]
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* [[Tiso_gene_13083]]
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** 2 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[RXN0-2161]]
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***EC-NUMBER
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** 4 associated gene(s):
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_587]]
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* [[Tiso_gene_10876]]
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*** [[Tiso_gene_1684]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_10015]]
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***EC-NUMBER
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*** [[Tiso_gene_1682]]
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* [[Tiso_gene_13394]]
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** 3 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_136]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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== Reaction(s) not found ==
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-MAP:
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{{#set: common name=3-oxo-dodecanoyl-[acyl-carrier protein] reductase}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
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{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: common name=L-selenocysteine biosynthesis II (archaea and eukaryotes)}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reaction found=4}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: total reaction=4}}
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{{#set: gene associated=Tiso_gene_500|Tiso_gene_135|Tiso_gene_9885|Tiso_gene_13083|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_136}}
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{{#set: completion rate=100.0}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 17:57, 18 March 2018

Pathway PWY-6281

  • taxonomic range:
  • common name:
    • L-selenocysteine biosynthesis II (archaea and eukaryotes)
  • Synonym(s):

Reaction(s) found

4 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12629&oldid=20823"