Difference between revisions of "Tiso gene 19542"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin de-epoxidase **...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7255 PWY-7255] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28221 TAX-28221]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1236 TAX-1236]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28216 TAX-28216]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28211 TAX-28211]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-976 TAX-976]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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* common name:
 
* common name:
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** ergothioneine biosynthesis I (bacteria)
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** violaxanthin de-epoxidase
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** violaxanthin_de-_chloroplast
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** violaxanthin_de-epoxidase
 
* Synonym(s):
 
* Synonym(s):
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** VDE
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[GLUTCYSLIG-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[CPD1F-131]][c] '''+''' 1 [[ASCORBATE]][c] '''=>''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[CPD1F-130]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14429 RXN-14429]
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** 1 H+[c] '''+''' 1 antheraxanthin[c] '''+''' 1 L-ascorbate[c] '''=>''' 1 L-dehydro-ascorbate[c] '''+''' 1 zeaxanthin[c] '''+''' 1 H2O[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14430 RXN-14430]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14431 RXN-14431]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15804 RXN-15804]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18088 RXN-18088]
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* [[Tiso_gene_5666]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18089 RXN-18089]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1275]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16523]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-28221}}
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* RHEA:
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{{#set: taxonomic range=TAX-1236}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21800 21800]
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{{#set: taxonomic range=TAX-28216}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-28211}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07179 R07179]
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{{#set: taxonomic range=TAX-976}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: common name=violaxanthin de-epoxidase}}
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{{#set: taxonomic range=TAX-201174}}
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{{#set: common name=violaxanthin_de-_chloroplast}}
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{{#set: common name=ergothioneine biosynthesis I (bacteria)}}
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{{#set: common name=violaxanthin_de-epoxidase}}
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{{#set: reaction found=1}}
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{{#set: common name=VDE}}
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{{#set: reaction not found=7}}
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{{#set: gene associated=Tiso_gene_5666|Tiso_gene_1275|Tiso_gene_16523}}
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{{#set: completion rate=14.0}}
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{{#set: in pathway=PWY-5945}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:57, 18 March 2018

Reaction RXN-7985

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • violaxanthin de-epoxidase
    • violaxanthin_de-_chloroplast
    • violaxanthin_de-epoxidase
  • Synonym(s):
    • VDE

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5945, zeaxanthin, antheraxanthin and violaxanthin interconversion: PWY-5945
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






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