Difference between revisions of "Tiso gene 395"

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(Created page with "Category:Gene == Gene Tiso_gene_17057 == * left end position: ** 2469 * transcription direction: ** POSITIVE * right end position: ** 3704 * centisome position: ** 62.5379...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fructose-_-bispho...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17057 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] ==
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* left end position:
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* direction:
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** 2469
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** fructose-_-bisphosphatase
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* right end position:
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** chloroplast_fructose-_-bisphosphatase
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** 3704
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.1.3.11 EC-3.1.3.11]
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** 62.53799   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ASPARTATEKIN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[WATER]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
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***automated-name-match
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* With common name(s):
 +
** 1 H2O[c] '''+''' 1 fructose 1,6-bisphosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 β-D-fructofuranose 6-phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_16502]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8226]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_9435]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[GLUTKIN-RXN]]
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** [[pantograph]]-[[creinhardtii]]
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** in-silico_annotation
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* [[Tiso_gene_4904]]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[RXN-12002]]
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* [[Tiso_gene_3483]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_15398]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_4905]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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== Pathways ==
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* [[HOMOSERSYN-PWY]]
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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* [[PWY-7176]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PROSYN-PWY]]
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* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
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* [[PWY-7153]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]]
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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* [[PWY-2942]]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6922]]
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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* [[PWY-2941]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6559]]
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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* [[PWY-3341]]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5097]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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* [[CITRULBIO-PWY]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6562]]
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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* [[ARGININE-SYN4-PWY]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[P101-PWY]]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2469}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11064 11064]
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{{#set: right end position=3704}}
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* LIGAND-RXN:
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{{#set: centisome position=62.53799    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
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{{#set: reaction associated=ASPARTATEKIN-RXN|GLUTKIN-RXN|RXN-12002}}
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* UNIPROT:
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{{#set: pathway associated=HOMOSERSYN-PWY|PWY-7176|PROSYN-PWY|PWY-7153|DAPLYSINESYN-PWY|PWY-2942|PWY-6922|PWY-2941|PWY-6559|PWY-3341|PWY-5097|CITRULBIO-PWY|PWY-6562|ARGININE-SYN4-PWY|P101-PWY}}
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** [http://www.uniprot.org/uniprot/P09199 P09199]
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** [http://www.uniprot.org/uniprot/P19112 P19112]
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** [http://www.uniprot.org/uniprot/P22780 P22780]
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** [http://www.uniprot.org/uniprot/P09467 P09467]
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** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
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** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
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** [http://www.uniprot.org/uniprot/P09202 P09202]
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** [http://www.uniprot.org/uniprot/Q45597 Q45597]
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** [http://www.uniprot.org/uniprot/P45292 P45292]
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** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
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** [http://www.uniprot.org/uniprot/P19912 P19912]
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** [http://www.uniprot.org/uniprot/P19911 P19911]
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** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
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** [http://www.uniprot.org/uniprot/P09201 P09201]
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** [http://www.uniprot.org/uniprot/P0A993 P0A993]
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** [http://www.uniprot.org/uniprot/P00636 P00636]
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** [http://www.uniprot.org/uniprot/P23014 P23014]
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** [http://www.uniprot.org/uniprot/P27994 P27994]
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** [http://www.uniprot.org/uniprot/P14766 P14766]
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** [http://www.uniprot.org/uniprot/P09195 P09195]
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** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
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** [http://www.uniprot.org/uniprot/P25851 P25851]
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** [http://www.uniprot.org/uniprot/Q05079 Q05079]
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** [http://www.uniprot.org/uniprot/P46275 P46275]
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** [http://www.uniprot.org/uniprot/P46276 P46276]
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** [http://www.uniprot.org/uniprot/Q43139 Q43139]
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** [http://www.uniprot.org/uniprot/P00637 P00637]
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** [http://www.uniprot.org/uniprot/O65827 O65827]
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** [http://www.uniprot.org/uniprot/Q42796 Q42796]
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** [http://www.uniprot.org/uniprot/P46267 P46267]
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** [http://www.uniprot.org/uniprot/Q07204 Q07204]
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** [http://www.uniprot.org/uniprot/P22418 P22418]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=fructose-_-bisphosphatase}}
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{{#set: common name=chloroplast_fructose-_-bisphosphatase}}
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{{#set: ec number=EC-3.1.3.11}}
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{{#set: gene associated=Tiso_gene_16502|Tiso_gene_8226|Tiso_gene_9435|Tiso_gene_4904|Tiso_gene_3483|Tiso_gene_15398|Tiso_gene_4905}}
 +
{{#set: in pathway=GLUCONEO-PWY|SUCSYN-PWY|GLYCOLYSIS|CALVIN-PWY|PWY-5484|P185-PWY|PWY66-399}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:59, 18 March 2018

Reaction F16BDEPHOS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • fructose-_-bisphosphatase
    • chloroplast_fructose-_-bisphosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 fructose 1,6-bisphosphate[c] => 1 phosphate[c] + 1 β-D-fructofuranose 6-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_395&oldid=21155"