Difference between revisions of "PRPP"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4OH2OXOGLUTARALDOL-RXN 4OH2OXOGLUTARALDOL-RXN] == * direction: ** REVERSIBLE * ec number: ** [http:...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4OH2OXOGLUTARALDOL-RXN 4OH2OXOGLUTARALDOL-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
−
* ec number:
+
* common name:
−
** [http://enzyme.expasy.org/EC/4.1.3.16 EC-4.1.3.16]
+
** TCA cycle VII (acetate-producers)
 
* Synonym(s):
 
* Synonym(s):
 +
** tricarboxylic acid cycle
 +
** citric acid cycle
 +
** Krebs cycle
 +
** Szent-Gyorgyi-Krebs cycle
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''5''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[CPD-15015]][c] '''<=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[GLYOX]][c]
+
* [[ACONITATEDEHYDR-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 4-hydroxy-2-oxoglutarate[c] '''<=>''' 1 pyruvate[c] '''+''' 1 glyoxylate[c]
+
*** [[Tiso_gene_13007]]
−
 
+
** 3 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_12620]]
+
*** [[orthology-synechocystis]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[ACONITATEHYDR-RXN]]
−
== Pathways  ==
+
** 1 associated gene(s):
−
* [[HYDROXYPRODEG-PWY]], trans-4-hydroxy-L-proline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPRODEG-PWY HYDROXYPRODEG-PWY]
+
*** [[Tiso_gene_13007]]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** 2 reconstruction source(s) associated:
−
== Reconstruction information  ==
+
*** [[annotation-in-silico_annotation]]
−
* [[orthology]]:
+
*** [[annotation-experimental_annotation]]
−
** [[pantograph]]:
+
* [[CITSYN-RXN]]
−
*** [[esiliculosus]]
+
** 4 associated gene(s):
 +
*** [[Tiso_gene_18030]]
 +
*** [[Tiso_gene_9601]]
 +
*** [[Tiso_gene_9603]]
 +
*** [[Tiso_gene_9602]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[FUMHYDR-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_6720]]
 +
*** [[Tiso_gene_3691]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[ISOCITDEH-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_18262]]
 +
*** [[Tiso_gene_10809]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8807 RXN-8807]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00470 R00470]
+
{{#set: common name=TCA cycle VII (acetate-producers)}}
−
* UNIPROT:
+
{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
+
{{#set: reaction found=5}}
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
+
{{#set: total reaction=9}}
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
+
{{#set: completion rate=56.0}}
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
+
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
+
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
+
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
+
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
+
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
+
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
+
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-4.1.3.16}}
+
−
{{#set: gene associated=Tiso_gene_12620}}
+
−
{{#set: in pathway=HYDROXYPRODEG-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+

Revision as of 18:00, 18 March 2018

Pathway PWY-7254

  • taxonomic range:
  • common name:
    • TCA cycle VII (acetate-producers)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PRPP&oldid=21162"