Difference between revisions of "PRPP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4OH2OXOGLUTARALDOL-RXN 4OH2OXOGLUTARALDOL-RXN] == * direction: ** REVERSIBLE * ec number: ** [http:...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4OH2OXOGLUTARALDOL-RXN 4OH2OXOGLUTARALDOL-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/4.1.3.16 EC-4.1.3.16]
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** TCA cycle VII (acetate-producers)
 
* Synonym(s):
 
* Synonym(s):
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** tricarboxylic acid cycle
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** citric acid cycle
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** Krebs cycle
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** Szent-Gyorgyi-Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CPD-15015]][c] '''<=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[GLYOX]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 4-hydroxy-2-oxoglutarate[c] '''<=>''' 1 pyruvate[c] '''+''' 1 glyoxylate[c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_12620]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[ACONITATEHYDR-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[HYDROXYPRODEG-PWY]], trans-4-hydroxy-L-proline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPRODEG-PWY HYDROXYPRODEG-PWY]
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*** [[Tiso_gene_13007]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]:
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* [[CITSYN-RXN]]
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*** [[esiliculosus]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6720]]
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*** [[Tiso_gene_3691]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8807 RXN-8807]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00470 R00470]
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{{#set: common name=TCA cycle VII (acetate-producers)}}
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* UNIPROT:
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
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** [http://www.uniprot.org/uniprot/P44480 P44480]
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/P0A955 P0A955]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
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{{#set: completion rate=56.0}}
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** [http://www.uniprot.org/uniprot/O25729 O25729]
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** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
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** [http://www.uniprot.org/uniprot/O83578 O83578]
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** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
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** [http://www.uniprot.org/uniprot/P50846 P50846]
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** [http://www.uniprot.org/uniprot/P38448 P38448]
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** [http://www.uniprot.org/uniprot/Q55872 Q55872]
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** [http://www.uniprot.org/uniprot/P94802 P94802]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-4.1.3.16}}
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{{#set: gene associated=Tiso_gene_12620}}
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{{#set: in pathway=HYDROXYPRODEG-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Revision as of 19:00, 18 March 2018

Pathway PWY-7254

  • taxonomic range:
  • common name:
    • TCA cycle VII (acetate-producers)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PRPP&oldid=21162"