Difference between revisions of "Tiso gene 19780"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17116 RXN-17116] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17116 RXN-17116] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
 
* common name:
 
* common name:
−
** thiolase
+
** flavonoid biosynthesis
−
** acetyl-_c-acetyltransferase
+
−
** 3-ketoacyl-_thiolase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** flavonoid biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''4''' reactions found over '''5''' reactions in the full pathway
−
** 1 [[CPD-18494]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-17365]][c] '''+''' 1 [[ACETYL-COA]][c]
+
* [[4-COUMARATE--COA-LIGASE-RXN]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1 3-oxo-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
+
*** [[Tiso_gene_12275]]
−
 
+
*** [[Tiso_gene_14183]]
−
== Genes associated with this reaction  ==
+
** 2 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-athaliana]]
−
* [[Tiso_gene_3856]]
+
*** [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* [[APIGNAR-RXN]]
−
***EC-NUMBER
+
** 2 associated gene(s):
−
* [[Tiso_gene_10116]]
+
*** [[Tiso_gene_9838]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_13414]]
−
***EC-NUMBER
+
** 2 reconstruction source(s) associated:
−
** EXPERIMENTAL_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_15327]]
+
* [[NARINGENIN-3-DIOXYGENASE-RXN]]
−
** EXPERIMENTAL_ANNOTATION
+
** 1 associated gene(s):
−
***EC-NUMBER
+
*** [[Tiso_gene_3330]]
−
* [[Tiso_gene_3855]]
+
** 2 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-athaliana]]
−
***EC-NUMBER
+
*** [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[RXN-3142]]
−
***EC-NUMBER
+
** 1 associated gene(s):
−
* [[Tiso_gene_17451]]
+
*** [[Tiso_gene_2613]]
−
** IN-SILICO_ANNOTATION
+
** 1 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[orthology-athaliana]]
−
** EXPERIMENTAL_ANNOTATION
+
== Reaction(s) not found ==
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN]
−
== Pathways  ==
+
−
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726]
+
−
** '''5''' reactions found over '''13''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* ARACYC:
−
{{#set: common name=thiolase}}
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: taxonomic range=TAX-58024}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: common name=flavonoid biosynthesis}}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: common name=flavonoid biosynthesis}}
−
{{#set: gene associated=Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_17451}}
+
{{#set: reaction found=4}}
−
{{#set: in pathway=PWY-7726}}
+
{{#set: total reaction=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: completion rate=80.0}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:02, 18 March 2018

Pathway PWY1F-FLAVSYN

  • taxonomic range:
  • common name:
    • flavonoid biosynthesis
  • Synonym(s):
    • flavonoid biosynthesis

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19780&oldid=21397"