Difference between revisions of "Tiso gene 8058"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** zinc_finger_fyve_dom...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5506 PWY-5506] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5506 PWY-5506] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** ORF
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** methanol oxidation to formaldehyde IV
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** zinc_finger_fyve_domain-containing_protein
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** triacylglycerol_lipase
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** class_3_lipase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.1.3 EC-3.1.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
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** 1 [[Dietary-retinyl-esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-13524]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c]
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* [[CATAL-RXN]]
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* With common name(s):
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** 8 associated gene(s):
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** 1 a dietary all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 all-trans-retinol[c] '''+''' 1 a long-chain fatty acid[c]
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*** [[Tiso_gene_11607]]
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*** [[Tiso_gene_4990]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3006]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_11916]]
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* [[Tiso_gene_17613]]
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*** [[Tiso_gene_19683]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_12499]]
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***EC-NUMBER
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*** [[Tiso_gene_5435]]
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* [[Tiso_gene_11437]]
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*** [[Tiso_gene_15923]]
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** IN-SILICO_ANNOTATION
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** 3 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14063]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_905]]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHANOL-OXIDASE-RXN METHANOL-OXIDASE-RXN]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16817]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2109]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14064]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19184]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17612]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2108]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2983]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17614]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8902]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17639]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7915]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3215]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14062]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_906]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5716]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14109]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17143]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9140]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_288]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=ORF}}
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{{#set: common name=methanol oxidation to formaldehyde IV}}
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{{#set: common name=zinc_finger_fyve_domain-containing_protein}}
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{{#set: reaction found=1}}
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{{#set: common name=triacylglycerol_lipase}}
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{{#set: total reaction=2}}
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{{#set: common name=class_3_lipase}}
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{{#set: completion rate=50.0}}
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{{#set: ec number=EC-3.1.1.3}}
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{{#set: gene associated=Tiso_gene_17613|Tiso_gene_11437|Tiso_gene_14063|Tiso_gene_905|Tiso_gene_16817|Tiso_gene_2109|Tiso_gene_14064|Tiso_gene_19184|Tiso_gene_17612|Tiso_gene_2108|Tiso_gene_2983|Tiso_gene_17614|Tiso_gene_8902|Tiso_gene_17639|Tiso_gene_7915|Tiso_gene_3215|Tiso_gene_14062|Tiso_gene_906|Tiso_gene_5716|Tiso_gene_14109|Tiso_gene_17143|Tiso_gene_9140|Tiso_gene_288}}
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{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:02, 18 March 2018

Pathway PWY-5506

  • taxonomic range:
  • common name:
    • methanol oxidation to formaldehyde IV
  • Synonym(s):

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8058&oldid=21465"