Difference between revisions of "Seminolipids"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.2.23-RXN 3.2.2.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine-d...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.2.23-RXN 3.2.2.23-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** formamidopyrimidine-dna_glycosylase
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** L-arginine biosynthesis IV (archaebacteria)
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** endonuclease_iii_8-oxoguanine_dna_glycosylase_isoform_1b
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** n-glycosylase_dna_lyase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.2.23 EC-3.2.2.23]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[DNA-containing-diamino-hydro-formamidops]][c] '''=>''' 1 [[DNA-containing-aPurinic-Sites]][c] '''+''' 1 [[CPD-16491]][c]
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* [[ARGSUCCINLYA-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 a ring-opened 7-methylguanine in DNA[c] '''=>''' 1 an apurinic site within DNA[c] '''+''' 1 2,6-diamino-4-hydroxy-5-(N-methyl)formamidopyrimidine[c]
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*** [[Tiso_gene_2485]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_9068]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_14609]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***AUTOMATED-NAME-MATCH
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* [[ARGSUCCINSYN-RXN]]
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* [[Tiso_gene_1280]]
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** 1 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_12592]]
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***AUTOMATED-NAME-MATCH
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** 7 reconstruction source(s) associated:
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* [[Tiso_gene_6558]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_16992]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* [[CARBPSYN-RXN]]
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* [[annotation]]:
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** 3 associated gene(s):
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** [[pathwaytools]]:
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*** [[Tiso_gene_4976]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_4975]]
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*** [[Tiso_gene_4685]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[ORNCARBAMTRANSFER-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18444]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-15005]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13144]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-15006]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6700]]
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*** [[Tiso_gene_8102]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-15007]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11231]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15003 RXN-15003]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15004 RXN-15004]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P44948 P44948]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P57014 P57014]
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{{#set: common name=L-arginine biosynthesis IV (archaebacteria)}}
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** [http://www.uniprot.org/uniprot/P05523 P05523]
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{{#set: reaction found=7}}
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** [http://www.uniprot.org/uniprot/P19210 P19210]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/P74290 P74290]
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{{#set: completion rate=78.0}}
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** [http://www.uniprot.org/uniprot/O69470 O69470]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=formamidopyrimidine-dna_glycosylase}}
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{{#set: common name=endonuclease_iii_8-oxoguanine_dna_glycosylase_isoform_1b}}
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{{#set: common name=n-glycosylase_dna_lyase}}
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{{#set: ec number=EC-3.2.2.23}}
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{{#set: gene associated=Tiso_gene_9068|Tiso_gene_14609|Tiso_gene_1280|Tiso_gene_6558|Tiso_gene_16992}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:04, 18 March 2018

Pathway PWY-7400

  • taxonomic range:
  • common name:
    • L-arginine biosynthesis IV (archaebacteria)
  • Synonym(s):

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Seminolipids&oldid=21642"