Difference between revisions of "H2Otm"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCINYL-L-HOMOSERINE O-SUCCINYL-L-HOMOSERINE] == * smiles: ** C(CC(=O)OCCC(C([O-])=O)[N+])C(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCINYL-L-HOMOSERINE O-SUCCINYL-L-HOMOSERINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] ==
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* smiles:
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* direction:
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** C(CC(=O)OCCC(C([O-])=O)[N+])C([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=GNISQJGXJIDKDJ-YFKPBYRVSA-M
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* common name:
 
* common name:
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** O-succinyl-L-homoserine
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** beta-glucosidase-like_chloroplastic
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* molecular weight:
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** ORF
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** 218.186   
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** beta_glucosidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
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** O-succinyl-homoserine
 
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** succinyl-homoserine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[SUCHMSSELCYSLh]]
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* With identifiers:
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* [[METBALT-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c] '''+''' 1 [[Glucopyranose]][c]
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* [[SUCHMSSELCYSL]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 2-hydroxy-2-methylpropanenitrile[c] '''+''' 1 D-glucopyranose[c]
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== Reaction(s) of unknown directionality ==
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* [[O-SUCCHOMOSERLYASE-RXN]]
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== Genes associated with this reaction  ==
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* [[RXN-9384]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10001]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13306]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5836]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13305]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2843]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15067]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2344]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6497]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 1492-23-5
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{{#set: direction=LEFT-TO-RIGHT}}
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* PUBCHEM:
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46878420 46878420]
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{{#set: common name=ORF}}
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* CHEBI:
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57661 57661]
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{{#set: common name=beta_glucosidase}}
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* BIGG : suchms
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{{#set: ec number=EC-3.2.1.21}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_6187|Tiso_gene_10001|Tiso_gene_13306|Tiso_gene_8669|Tiso_gene_6188|Tiso_gene_3467|Tiso_gene_15066|Tiso_gene_5836|Tiso_gene_6007|Tiso_gene_13305|Tiso_gene_2843|Tiso_gene_15067|Tiso_gene_2344|Tiso_gene_6497}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01118 C01118]
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{{#set: in pathway=PWY-3121|PWY-7091}}
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{{#set: smiles=C(CC(=O)OCCC(C([O-])=O)[N+])C([O-])=O}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=GNISQJGXJIDKDJ-YFKPBYRVSA-M}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: common name=O-succinyl-L-homoserine}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=218.186    }}
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{{#set: common name=O-succinyl-homoserine|succinyl-homoserine}}
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{{#set: consumed by=SUCHMSSELCYSLh|METBALT-RXN|SUCHMSSELCYSL}}
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{{#set: consumed or produced by=O-SUCCHOMOSERLYASE-RXN|RXN-9384}}
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Revision as of 19:04, 18 March 2018

Reaction RXN-5341

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-glucosidase-like_chloroplastic
    • ORF
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3121, linamarin degradation: PWY-3121
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7091, linustatin bioactivation: PWY-7091
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=H2Otm&oldid=21682"