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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6348 PWY-6348] == |
| − | * direction: | + | * taxonomic range: |
| − | ** REVERSIBLE | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] |
| | * common name: | | * common name: |
| − | ** isopentenyl-diphosphate_delta-isomerase | + | ** phosphate acquisition |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''1''' reactions found over '''1''' reactions in the full pathway |
| − | ** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
| + | * [[ACID-PHOSPHATASE-RXN]] |
| − | * With common name(s):
| + | ** 9 associated gene(s): |
| − | ** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
| + | *** [[Tiso_gene_11838]] |
| − | | + | *** [[Tiso_gene_17310]] |
| − | == Genes associated with this reaction ==
| + | *** [[Tiso_gene_17625]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[Tiso_gene_17309]] |
| − | * [[Tiso_gene_8653]]
| + | *** [[Tiso_gene_15256]] |
| − | ** IN-SILICO_ANNOTATION
| + | *** [[Tiso_gene_17610]] |
| − | ***EC-NUMBER
| + | *** [[Tiso_gene_4497]] |
| − | == Pathways ==
| + | *** [[Tiso_gene_8159]] |
| − | * [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
| + | *** [[Tiso_gene_5996]] |
| − | ** '''5''' reactions found over '''7''' reactions in the full pathway
| + | ** 2 reconstruction source(s) associated: |
| − | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] | + | *** [[annotation-in-silico_annotation]] |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway | + | *** [[orthology-esiliculosus]] |
| − | * [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
| + | == Reaction(s) not found == |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway | + | |
| − | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] | + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383] | + | |
| − | ** '''2''' reactions found over '''5''' reactions in the full pathway | + | |
| − | * [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391] | + | |
| − | ** '''6''' reactions found over '''8''' reactions in the full pathway | + | |
| − | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] | + | |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | |
| − | * [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922] | + | |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway | + | |
| − | * [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | + | |
| − | ** '''3''' reactions found over '''6''' reactions in the full pathway | + | |
| − | * [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524] | + | |
| − | ** '''4''' reactions found over '''8''' reactions in the full pathway | + | |
| − | == Reconstruction information ==
| + | |
| − | * [[manual]]: | + | |
| − | ** [[primary_network]] | + | |
| − | * [[annotation]]: | + | |
| − | ** [[pathwaytools]]: | + | |
| − | *** [[in-silico_annotation]] | + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: taxonomic range=TAX-2759}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
| + | {{#set: taxonomic range=TAX-2}} |
| − | * LIGAND-RXN:
| + | {{#set: common name=phosphate acquisition}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
| + | {{#set: reaction found=1}} |
| − | * UNIPROT:
| + | {{#set: total reaction=1}} |
| − | ** [http://www.uniprot.org/uniprot/P15496 P15496]
| + | {{#set: completion rate=100.0}} |
| − | ** [http://www.uniprot.org/uniprot/Q10132 Q10132]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q38929 Q38929]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42553 Q42553]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P93355 P93355]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O81691 O81691]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O81660 O81660]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O81659 O81659]
| + | |
| − | {{#set: direction=REVERSIBLE}} | + | |
| − | {{#set: common name=isopentenyl-diphosphate_delta-isomerase}}
| + | |
| − | {{#set: ec number=EC-5.3.3.2}} | + | |
| − | {{#set: gene associated=Tiso_gene_8653}} | + | |
| − | {{#set: in pathway=PWY-6174|PWY-7560|PWY-6859|NONMEVIPP-PWY|PWY-6383|PWY-7391|PWY-5123|PWY-922|PWY-7102|PWY-7524}} | + | |
| − | {{#set: reconstruction category=manual}} | + | |
| − | {{#set: reconstruction source=primary_network}} | + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=in-silico_annotation}}
| + | |
