Difference between revisions of "CPD-15818"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11481 RXN-11481] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-[acyl-carrier...")
(Created page with "Category:Gene == Gene Tiso_gene_2924 == * left end position: ** 7043 * transcription direction: ** POSITIVE * right end position: ** 14133 * centisome position: ** 39.1734...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11481 RXN-11481] ==
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== Gene Tiso_gene_2924 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 7043
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* common name:
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* transcription direction:
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** 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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** 14133
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* centisome position:
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** 39.17348   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[ATPASE-RXN]]
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** 1 [[3-hydroxypimeloyl-ACP-methyl-esters]][c] '''=>''' 1 [[Enoylpimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[WATER]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 a (3R)-3-hydroxypimeloyl-[acp] methyl ester[c] '''=>''' 1 an enoylpimeloyl-[acp] methyl ester[c] '''+''' 1 H2O[c]
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* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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* [[Tiso_gene_6885]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6884]]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***AUTOMATED-NAME-MATCH
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***ec-number
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== Pathways  ==
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* [[RXN-12195]]
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* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
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** in-silico_annotation
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** '''9''' reactions found over '''11''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-12196]]
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* [[orthology]]:
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** in-silico_annotation
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** [[pantograph]]:
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***ec-number
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*** [[creinhardtii]]
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* [[RXN0-5462]]
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* [[annotation]]:
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** in-silico_annotation
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** [[pathwaytools]]:
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***ec-number
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*** [[experimental_annotation]]
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== Pathways associated ==
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* [[PWY-7210]]
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* [[PWY-7198]]
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* [[PWY-6797]]
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* [[PWY-7184]]
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* [[PWY-7539]]
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* [[PWY-6545]]
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* [[PWY-6147]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=7043}}
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{{#set: common name=3-hydroxyacyl-[acyl-carrier-protein] dehydratase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: right end position=14133}}
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{{#set: gene associated=Tiso_gene_6885|Tiso_gene_6884}}
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{{#set: centisome position=39.17348    }}
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{{#set: in pathway=PWY-6519}}
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{{#set: reaction associated=ATPASE-RXN|DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN|H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-6797|PWY-7184|PWY-7539|PWY-6545|PWY-6147}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii}}
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{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation}}
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Revision as of 19:07, 18 March 2018

Gene Tiso_gene_2924

  • left end position:
    • 7043
  • transcription direction:
    • POSITIVE
  • right end position:
    • 14133
  • centisome position:
    • 39.17348
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-15818&oldid=22061"