Difference between revisions of "3.4.16.5-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5116 RXN0-5116] == * direction: ** LEFT-TO-RIGHT * common name: ** ribulokinase * ec number: *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5116 RXN0-5116] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** ribulokinase
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** sucrose biosynthesis II
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.16 EC-2.7.1.16]
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* Synonym(s):
 
* Synonym(s):
 +
** sucrose biosynthesis II (from starch degradation intermediates)
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** sucrose biosynthesis II (plant cytosol)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''8''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[L-RIBULOSE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[L-RIBULOSE-5-P]][c] '''+''' 1 [[ADP]][c]
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* [[GLUC1PURIDYLTRANS-RXN]]
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* With common name(s):
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** 14 associated gene(s):
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** 1 ATP[c] '''+''' 1 L-ribulose[c] '''=>''' 1 H+[c] '''+''' 1 L-ribulose 5-phosphate[c] '''+''' 1 ADP[c]
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*** [[Tiso_gene_6459]]
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*** [[Tiso_gene_5879]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17566]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_16930]]
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* [[Tiso_gene_16670]]
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*** [[Tiso_gene_14796]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_9110]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_17531]]
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== Pathways  ==
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*** [[Tiso_gene_4816]]
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* [[ARABCAT-PWY]], L-arabinose degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ARABCAT-PWY ARABCAT-PWY]
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*** [[Tiso_gene_7102]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_13477]]
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== Reconstruction information  ==
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*** [[Tiso_gene_7440]]
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* [[annotation]]:
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*** [[Tiso_gene_11401]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_6457]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_6458]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[GLUCOKIN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSPHOGLUCMUT-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_13477]]
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*** [[Tiso_gene_4816]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14353]]
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** 1 associated gene(s):
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*** [[Tiso_gene_1011]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[SUCROSE-PHOSPHATE-SYNTHASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14247]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14354 RXN-14354]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCROSE-PHOSPHATASE-RXN SUCROSE-PHOSPHATASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22072 22072]
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{{#set: common name=sucrose biosynthesis II}}
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* LIGAND-RXN:
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{{#set: common name=sucrose biosynthesis II (from starch degradation intermediates)|sucrose biosynthesis II (plant cytosol)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02439 R02439]
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{{#set: reaction found=6}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=8}}
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{{#set: common name=ribulokinase}}
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{{#set: completion rate=75.0}}
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{{#set: ec number=EC-2.7.1.16}}
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{{#set: gene associated=Tiso_gene_16670}}
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{{#set: in pathway=ARABCAT-PWY}}
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−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:07, 18 March 2018

Pathway PWY-7238

  • taxonomic range:
  • common name:
    • sucrose biosynthesis II
  • Synonym(s):
    • sucrose biosynthesis II (from starch degradation intermediates)
    • sucrose biosynthesis II (plant cytosol)

Reaction(s) found

6 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3.4.16.5-RXN&oldid=22088"