Difference between revisions of "RXN1A0-6303"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** protein_pyr1-3 *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** protein_pyr1-3
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** gluconeogenesis II (Methanobacterium thermoautotrophicum)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.3.2 EC-2.1.3.2]
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* Synonym(s):
 
* Synonym(s):
 +
** carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''14''' reactions in the full pathway
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** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[CARBAMYUL-L-ASPARTATE]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 carbamoyl phosphate[c] '''+''' 1 L-aspartate[c] '''<=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 N-carbamoyl-L-aspartate[c]
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*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_8720]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_13527]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[synechocystis]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[3PGAREARR-RXN]]
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** [[pantograph]]-[[creinhardtii]]
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** 16 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_2667]]
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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*** [[Tiso_gene_9922]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_15048]]
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* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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*** [[Tiso_gene_2841]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_14530]]
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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*** [[Tiso_gene_16754]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_2365]]
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== Reconstruction information  ==
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*** [[Tiso_gene_16271]]
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* [[orthology]]:
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*** [[Tiso_gene_5468]]
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** [[pantograph]]:
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*** [[Tiso_gene_20311]]
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*** [[creinhardtii]]
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*** [[Tiso_gene_14664]]
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*** [[synechocystis]]
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*** [[Tiso_gene_15391]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_14212]]
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*** [[athaliana]]
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*** [[Tiso_gene_10516]]
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* [[manual]]:
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*** [[Tiso_gene_9923]]
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** [[primary_network]]
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*** [[Tiso_gene_7201]]
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* [[annotation]]:
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** 7 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-experimental_annotation]]
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*** [[experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PYRUVATE-CARBOXYLASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_15144]]
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*** [[Tiso_gene_2812]]
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*** [[Tiso_gene_15145]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
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*** [[Tiso_gene_18927]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_7660]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_19962]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20013 20013]
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{{#set: common name=gluconeogenesis II (Methanobacterium thermoautotrophicum)}}
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* LIGAND-RXN:
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{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01397 R01397]
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{{#set: reaction found=8}}
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* UNIPROT:
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{{#set: total reaction=14}}
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** [http://www.uniprot.org/uniprot/P08955 P08955]
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/P27708 P27708]
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** [http://www.uniprot.org/uniprot/Q04595 Q04595]
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** [http://www.uniprot.org/uniprot/Q59711 Q59711]
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** [http://www.uniprot.org/uniprot/Q91437 Q91437]
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** [http://www.uniprot.org/uniprot/P65616 P65616]
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** [http://www.uniprot.org/uniprot/Q59712 Q59712]
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** [http://www.uniprot.org/uniprot/Q9CF79 Q9CF79]
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** [http://www.uniprot.org/uniprot/Q58976 Q58976]
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** [http://www.uniprot.org/uniprot/P08421 P08421]
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** [http://www.uniprot.org/uniprot/P0A786 P0A786]
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** [http://www.uniprot.org/uniprot/P0A7F3 P0A7F3]
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** [http://www.uniprot.org/uniprot/P19936 P19936]
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** [http://www.uniprot.org/uniprot/Q58801 Q58801]
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** [http://www.uniprot.org/uniprot/Q9PNJ6 Q9PNJ6]
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** [http://www.uniprot.org/uniprot/P05654 P05654]
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** [http://www.uniprot.org/uniprot/P0A1Z4 P0A1Z4]
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** [http://www.uniprot.org/uniprot/P19910 P19910]
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** [http://www.uniprot.org/uniprot/P07259 P07259]
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** [http://www.uniprot.org/uniprot/P20054 P20054]
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** [http://www.uniprot.org/uniprot/P05990 P05990]
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** [http://www.uniprot.org/uniprot/Q06950 Q06950]
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** [http://www.uniprot.org/uniprot/Q09027 Q09027]
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** [http://www.uniprot.org/uniprot/P49077 P49077]
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** [http://www.uniprot.org/uniprot/Q9S983 Q9S983]
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** [http://www.uniprot.org/uniprot/Q09794 Q09794]
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** [http://www.uniprot.org/uniprot/P74163 P74163]
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** [http://www.uniprot.org/uniprot/Q43064 Q43064]
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** [http://www.uniprot.org/uniprot/Q43086 Q43086]
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** [http://www.uniprot.org/uniprot/Q43087 Q43087]
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** [http://www.uniprot.org/uniprot/Q84493 Q84493]
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** [http://www.uniprot.org/uniprot/Q9UAH8 Q9UAH8]
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** [http://www.uniprot.org/uniprot/Q60252 Q60252]
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** [http://www.uniprot.org/uniprot/P96174 P96174]
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** [http://www.uniprot.org/uniprot/P96175 P96175]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=protein_pyr1-3}}
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{{#set: ec number=EC-2.1.3.2}}
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{{#set: gene associated=Tiso_gene_13527}}
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{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:07, 18 March 2018

Pathway PWY-6142

  • taxonomic range:
  • common name:
    • gluconeogenesis II (Methanobacterium thermoautotrophicum)
  • Synonym(s):
    • carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)

Reaction(s) found

8 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1A0-6303&oldid=22138"