Difference between revisions of "TRNA-uridine34"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
(Created page with "Category:Gene == Gene Tiso_gene_12184 == * left end position: ** 43 * transcription direction: ** POSITIVE * right end position: ** 2675 * centisome position: ** 0.5945796...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
+
== Gene Tiso_gene_12184 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 43
−
* common name:
+
* transcription direction:
−
** carbamoyl_phosphate_synthetase
+
** POSITIVE
−
** protein_pyr1-3
+
* right end position:
−
* ec number:
+
** 2675
−
** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
+
* centisome position:
 +
** 0.59457964   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* [[ACSERLY-RXN]]
−
** 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[PROTON]][c]
+
** in-silico_annotation
−
* With common name(s):
+
***ec-number
−
** 2 ATP[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''=>''' 2 ADP[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 1 phosphate[c] '''+''' 2 H+[c]
+
** experimental_annotation
−
 
+
***ec-number
−
== Genes associated with this reaction  ==
+
* [[RXN-12726]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** in-silico_annotation
−
* [[Tiso_gene_4976]]
+
***ec-number
−
** IN-SILICO_ANNOTATION
+
** experimental_annotation
−
***EC-NUMBER
+
***ec-number
−
* [[Tiso_gene_4975]]
+
* [[SULFOCYS-RXN]]
−
** IN-SILICO_ANNOTATION
+
** in-silico_annotation
−
***EC-NUMBER
+
***ec-number
−
** EXPERIMENTAL_ANNOTATION
+
** experimental_annotation
−
***EC-NUMBER
+
***ec-number
−
* [[Tiso_gene_4685]]
+
== Pathways associated ==
−
** IN-SILICO_ANNOTATION
+
* [[CYSTSYN-PWY]]
−
***EC-NUMBER
+
* [[PWY-6936]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways ==
+
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=43}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
+
{{#set: transcription direction=POSITIVE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
+
{{#set: right end position=2675}}
−
* LIGAND-RXN:
+
{{#set: centisome position=0.59457964    }}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
+
{{#set: reaction associated=ACSERLY-RXN|RXN-12726|SULFOCYS-RXN}}
−
* UNIPROT:
+
{{#set: pathway associated=CYSTSYN-PWY|PWY-6936}}
−
** [http://www.uniprot.org/uniprot/O15829 O15829]
+
−
** [http://www.uniprot.org/uniprot/O15830 O15830]
+
−
** [http://www.uniprot.org/uniprot/P07756 P07756]
+
−
** [http://www.uniprot.org/uniprot/P31327 P31327]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=carbamoyl_phosphate_synthetase}}
+
−
{{#set: common name=protein_pyr1-3}}
+
−
{{#set: ec number=EC-6.3.4.16}}
+
−
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4975|Tiso_gene_4685}}
+
−
{{#set: in pathway=PWY-4984}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:08, 18 March 2018

Gene Tiso_gene_12184

  • left end position:
    • 43
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2675
  • centisome position:
    • 0.59457964
  • Synonym(s):

Reactions associated

  • ACSERLY-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-12726
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • SULFOCYS-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRNA-uridine34&oldid=22154"