Difference between revisions of "CPD-323"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE] == * smiles: ** C(NC1(NC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
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* smiles:
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* direction:
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** C(NC1(NC(NC(=O)C(N)=1)=O))C(O)C(O)C(O)CO
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=XKQZIXVJVUPORE-RPDRRWSUSA-N
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* common name:
 
* common name:
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** 5-amino-6-(D-ribitylamino)uracil
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** polyketide_synthase
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* molecular weight:
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** ORF
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** 276.249   
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** 6-(1-D-ribitylamino)-5-amino-2,4-dihydroxypyrimidine
 
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** 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione
 
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** ARP
 
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** 6-(1-D-ribitylamino)-5-aminouracil
 
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** 5-amino-6-(1-D-ribitylamino)pyrimidine-2,4(1H,3H)-dione
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RIBOFLAVIN-SYN-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c] '''+''' 1 [[AMP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 stearate[c] '''=>''' 1 diphosphate[c] '''+''' 1 stearoyl-CoA[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12275]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C04732 C04732]
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{{#set: common name=polyketide_synthase}}
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* CHEBI:
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{{#set: common name=ORF}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15934 15934]
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{{#set: common name=long_chain_acyl-_synthetase}}
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* BIGG : 4r5au
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{{#set: common name=acyl-_synthetase}}
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* PUBCHEM:
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{{#set: ec number=EC-6.2.1.3}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=193516 193516]
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{{#set: gene associated=Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_348|Tiso_gene_12275|Tiso_gene_4191|Tiso_gene_135}}
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* HMDB : HMDB11106
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{{#set: in pathway=PWY-5989}}
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{{#set: smiles=C(NC1(NC(NC(=O)C(N)=1)=O))C(O)C(O)C(O)CO}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=XKQZIXVJVUPORE-RPDRRWSUSA-N}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: common name=5-amino-6-(D-ribitylamino)uracil}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=276.249    }}
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{{#set: common name=6-(1-D-ribitylamino)-5-amino-2,4-dihydroxypyrimidine|5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione|ARP|6-(1-D-ribitylamino)-5-aminouracil|5-amino-6-(1-D-ribitylamino)pyrimidine-2,4(1H,3H)-dione}}
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{{#set: produced by=RIBOFLAVIN-SYN-RXN}}
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Revision as of 19:10, 18 March 2018

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 stearate[c] => 1 diphosphate[c] + 1 stearoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-323&oldid=22446"