Difference between revisions of "ExchangeSeed CPD-3"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-3201 RXN0-3201] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * common name: | ||
| + | ** ORF | ||
| + | ** trna_intron_catalytic_cterminal_subfamily_protein | ||
* ec number: | * ec number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 a | + | ** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * [[Tiso_gene_3776]] |
| − | ** [[ | + | ** IN-SILICO_ANNOTATION |
| + | ***EC-NUMBER | ||
| + | * [[Tiso_gene_10338]] | ||
| + | ** IN-SILICO_ANNOTATION | ||
| + | ***EC-NUMBER | ||
| + | * [[Tiso_gene_5254]] | ||
| + | ** IN-SILICO_ANNOTATION | ||
| + | ***EC-NUMBER | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689] | ||
| + | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803] | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[ | + | * Category: [[annotation]] |
| − | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| − | *** [[ | + | *** Tool: [[pathwaytools]] |
== External links == | == External links == | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/O07118 O07118] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: ec number=EC- | + | {{#set: common name=ORF}} |
| − | {{#set: gene associated= | + | {{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}} |
| − | {{#set: in pathway=}} | + | {{#set: ec number=EC-4.6.1.16}} |
| − | {{#set: reconstruction category= | + | {{#set: gene associated=Tiso_gene_3776|Tiso_gene_10338|Tiso_gene_5254}} |
| − | {{#set: reconstruction | + | {{#set: in pathway=PWY-6689|PWY-7803}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction category=annotation}} |
| + | {{#set: reconstruction source=annotation-in-silico_annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Revision as of 18:14, 18 March 2018
Contents
Reaction 3.1.27.9-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- trna_intron_catalytic_cterminal_subfamily_protein
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD0-2350[c] => 1 Pre-tRNA-3-prime-half-molecules[c] + 1 Pre-tRNA-5-prime-half-molecules[c] + 1 tRNA-Introns[c]
- With common name(s):
- 1 a polycistronic tRNA precursor[c] => 1 a 3'-half-tRNA molecule with a 5'-OH end[c] + 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] + 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_3776
- IN-SILICO_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
- Tiso_gene_10338
- IN-SILICO_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
- Tiso_gene_5254
- IN-SILICO_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
Pathways
- PWY-6689, tRNA splicing I: PWY-6689
- 2 reactions found over 7 reactions in the full pathway
- PWY-7803, tRNA splicing II: PWY-7803
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- UNIPROT:
