Difference between revisions of "TRANS-RXN-76"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/5.1.3...")
(Created page with "Category:Gene == Gene Tiso_gene_6036 == * left end position: ** 8233 * transcription direction: ** POSITIVE * right end position: ** 9508 * centisome position: ** 65.11389...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] ==
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== Gene Tiso_gene_6036 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 8233
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18]
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** POSITIVE
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* right end position:
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** 9508
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* centisome position:
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** 65.11389   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GSHTRAN-RXN]]
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** 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 GDP-&alpha;-D-mannose[c] '''<=>''' 1 GDP-&beta;-L-galactose[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[GST-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_6621]]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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** experimental_annotation
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** [[pantograph]]-[[esiliculosus]]
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***ec-number
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== Pathways  ==
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* [[RXN-13673]]
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* [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12]
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** in-silico_annotation
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** '''1''' reactions found over '''2''' reactions in the full pathway
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***ec-number
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* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13]
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** experimental_annotation
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** '''1''' reactions found over '''3''' reactions in the full pathway
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***ec-number
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* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115]
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* [[RXN-15680]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
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***ec-number
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** '''6''' reactions found over '''8''' reactions in the full pathway
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** experimental_annotation
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== Reconstruction information  ==
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***ec-number
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* [[orthology]]:
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== Pathways associated ==
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** [[pantograph]]:
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* [[PWY-7112]]
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*** [[athaliana]]
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* [[PWY-6842]]
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*** [[esiliculosus]]
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* [[PWY-4061]]
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* [[PWY-7533]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=8233}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11144 11144]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=9508}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
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{{#set: centisome position=65.11389    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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{{#set: ec number=EC-5.1.3.18}}
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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{{#set: gene associated=Tiso_gene_6621}}
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{{#set: in pathway=PWY4FS-12|PWY4FS-13|PWY-5115|PWY-882}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Revision as of 19:14, 18 March 2018

Gene Tiso_gene_6036

  • left end position:
    • 8233
  • transcription direction:
    • POSITIVE
  • right end position:
    • 9508
  • centisome position:
    • 65.11389
  • Synonym(s):

Reactions associated

  • GSHTRAN-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • GST-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-13673
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-15680
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRANS-RXN-76&oldid=22897"