Difference between revisions of "P562-PWY"

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(Created page with "Category:Gene == Gene Tiso_gene_18566 == * left end position: ** 24 * transcription direction: ** POSITIVE * right end position: ** 2300 * centisome position: ** 0.8163265...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_18566 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] ==
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* left end position:
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* direction:
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** 24
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
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* right end position:
+
−
** 2300
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−
* centisome position:
+
−
** 0.8163265   
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* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
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== Reaction Formula ==
−
* [[ACOA120or]]
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* With identifiers:
 +
** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
 +
* With common name(s):
 +
** 1 all-trans-lycopene[c] '''=>''' 1 γ-carotene[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_11980]]
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[creinhardtii]]
 
** [[pantograph]]-[[creinhardtii]]
−
* [[ACOA140or]]
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* [[Tiso_gene_6282]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[athaliana]]
−
* [[ACOA160or]]
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* [[Tiso_gene_4457]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[athaliana]]
−
* [[ACOA40or]]
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* [[Tiso_gene_3577]]
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** [[pantograph]]-[[creinhardtii]]
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−
* [[ACOA80or]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[ACYL-COA-OXIDASE-RXN]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN]]
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−
** in-silico_annotation
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−
***ec-number
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−
* [[RXN-10696]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-10706]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-10707]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-11026]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-11734]]
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−
** in-silico_annotation
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−
***ec-number
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−
* [[RXN-12518]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-12669]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-13451]]
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−
** in-silico_annotation
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−
***ec-number
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−
* [[RXN-13615]]
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−
** in-silico_annotation
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−
***ec-number
+
−
* [[RXN-14131]]
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−
** in-silico_annotation
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−
***ec-number
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−
* [[RXN-14193]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14229]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[RXN-14262]]
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−
** in-silico_annotation
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−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14278]]
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−
** in-silico_annotation
+
−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[RXN-14576]]
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−
** in-silico_annotation
+
−
***ec-number
+
−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14771]]
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−
** in-silico_annotation
+
−
***ec-number
+
−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14775]]
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−
** in-silico_annotation
+
−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14785]]
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−
** in-silico_annotation
+
−
***ec-number
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[RXN-14789]]
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−
** in-silico_annotation
+
−
***ec-number
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[RXN-14796]]
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* [[Tiso_gene_1547]]
−
** in-silico_annotation
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** [[pantograph]]-[[athaliana]]
−
***ec-number
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* [[Tiso_gene_8263]]
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[RXN-16134]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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***ec-number
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** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[RXN-16540]]
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* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
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** in-silico_annotation
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** '''1''' reactions found over '''6''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-16557]]
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* Category: [[orthology]]
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** in-silico_annotation
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** Source: [[orthology-athaliana]]
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***ec-number
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*** Tool: [[pantograph]]
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* [[RXN-17113]]
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** Source: [[orthology-creinhardtii]]
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** in-silico_annotation
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*** Tool: [[pantograph]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
−
== Pathways associated ==
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*** Tool: [[pantograph]]
−
* [[PWY-6920]]
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−
* [[PWY-7340]]
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−
* [[PWY-7656]]
+
−
* [[PWY-7291]]
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−
* [[PWY-735]]
+
−
* [[PWY-7606]]
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−
* [[PWY-7338]]
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−
* [[PWY-7094]]
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−
* [[PWY-6837]]
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−
* [[PWY66-391]]
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−
* [[PWY-5136]]
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−
* [[PWY-7726]]
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−
* [[PWY-7007]]
+
−
* [[PWY-7337]]
+
−
* [[PWY-7288]]
+
−
* [[PWY-7654]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=24}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
−
{{#set: right end position=2300}}
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* LIGAND-RXN:
−
{{#set: centisome position=0.8163265    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
−
{{#set: reaction associated=ACOA120or|ACOA140or|ACOA160or|ACOA40or|ACOA80or|ACYL-COA-OXIDASE-RXN|LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN|RXN-10696|RXN-10706|RXN-10707|RXN-11026|RXN-11734|RXN-12518|RXN-12669|RXN-13451|RXN-13615|RXN-14131|RXN-14193|RXN-14229|RXN-14262|RXN-14278|RXN-14576|RXN-14771|RXN-14775|RXN-14785|RXN-14789|RXN-14796|RXN-16134|RXN-16540|RXN-16557|RXN-17113}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-6920|PWY-7340|PWY-7656|PWY-7291|PWY-735|PWY-7606|PWY-7338|PWY-7094|PWY-6837|PWY66-391|PWY-5136|PWY-7726|PWY-7007|PWY-7337|PWY-7288|PWY-7654}}
+
{{#set: ec number=EC-5.5.1.19}}
 +
{{#set: gene associated=Tiso_gene_11980|Tiso_gene_6282|Tiso_gene_4457|Tiso_gene_3577|Tiso_gene_1547|Tiso_gene_8263}}
 +
{{#set: in pathway=PWY-5943|PWY-7591}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 18:18, 18 March 2018

Reaction RXN1F-150

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7591, okenone biosynthesis: PWY-7591
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P562-PWY&oldid=23319"