Difference between revisions of "Tiso gene 3970"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14214 RXN-14214] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * Synonym(s): == React...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14214 RXN-14214] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** cis-genanyl-CoA degradation
 
* Synonym(s):
 
* Synonym(s):
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** acyclic terpene utilization pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''9''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[DATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[DADP]][c] '''+''' 1 [[PROTON]][c]
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* [[ACETATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 H2O[c] '''+''' 1 dATP[c] '''=>''' 1 phosphate[c] '''+''' 1 dADP[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_1612]]
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*** [[Tiso_gene_3617]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3616]]
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Genes have been associated with this reaction based on different elements listed below.
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** 6 reconstruction source(s) associated:
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* [[Tiso_gene_12899]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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* [[Tiso_gene_20236]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-11917]]
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== Pathways  ==
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_16181]]
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* [[orthology]]:
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** 2 reconstruction source(s) associated:
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** [[pantograph]]:
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*** [[orthology-athaliana]]
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*** [[esiliculosus]]
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*** [[orthology-esiliculosus]]
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* [[annotation]]:
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* [[RXN-11919]]
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** [[pathwaytools]]:
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** 1 associated gene(s):
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*** [[experimental_annotation]]
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*** [[Tiso_gene_14257]]
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*** [[in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-11921]]
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** 1 associated gene(s):
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*** [[Tiso_gene_16181]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.3.26-RXN 4.1.3.26-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GERANOYL-COA-CARBOXYLASE-RXN GERANOYL-COA-CARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN ISOHEXENYLGLUTACONYL-COA-HYDRATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11918 RXN-11918]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11920 RXN-11920]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* UM-BBD-PWY : cit
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{{#set: common name=ORF}}
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* LIGAND-MAP:
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{{#set: gene associated=Tiso_gene_12899|Tiso_gene_20236}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00281 map00281]
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{{#set: in pathway=}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=cis-genanyl-CoA degradation}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=acyclic terpene utilization pathway}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reaction found=4}}
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{{#set: reconstruction category=annotation}}
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{{#set: total reaction=9}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: completion rate=44.0}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:20, 18 March 2018

Pathway PWY-6672

  • taxonomic range:
  • common name:
    • cis-genanyl-CoA degradation
  • Synonym(s):
    • acyclic terpene utilization pathway

Reaction(s) found

4 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3970&oldid=23627"