Difference between revisions of "RXN-12242"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17932 CPD-17932] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.133-RXN 2.7.1.133-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ras-related_gtp-bin...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17932 CPD-17932] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.133-RXN 2.7.1.133-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC4(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C([O-])=O)C(NC(C)C(=O)NC(C([O-])=O)CCCC(C(NC(C)C([O-])=O)=O)NC(=O)CCC(C(=O)[O-])NC(=O)C(C)NC(=O)C(C)OC2(C(OC1(OC(CO)C(O[R3])C(O)C(NC(=O)C)1))C(CO)OC(C(NC(=O)C)2)O[R2]))=O)C(OC3(OC(CO)C(O[R1])C(O)C(NC(=O)C)3))C(CO)O4))([O-])=O)C)C)C)C)C)C)C
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
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** ras-related_gtp-binding_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.159 EC-2.7.1.159]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-16659]]
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** 1 [[ATP]][c] '''+''' 1 [[INOSITOL-1-3-4-TRIPHOSPHATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[CPD-505]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 D-myo-inositol (1,3,4)-trisphosphate[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 D-myo-inositol (1,3,4,6)-tetrakisphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15232]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6366]], D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6366 PWY-6366]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6365]], D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6365 PWY-6365]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6362]], 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6362 PWY-6362]
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** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6554]], 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6554 PWY-6554]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=91819739 91819739]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20940 20940]
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC4(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C([O-])=O)C(NC(C)C(=O)NC(C([O-])=O)CCCC(C(NC(C)C([O-])=O)=O)NC(=O)CCC(C(=O)[O-])NC(=O)C(C)NC(=O)C(C)OC2(C(OC1(OC(CO)C(O[R3])C(O)C(NC(=O)C)1))C(CO)OC(C(NC(=O)C)2)O[R2]))=O)C(OC3(OC(CO)C(O[R1])C(O)C(NC(=O)C)3))C(CO)O4))([O-])=O)C)C)C)C)C)C)C}}
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* LIGAND-RXN:
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{{#set: common name=a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03429 R03429]
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{{#set: produced by=RXN-16659}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ras-related_gtp-binding_protein}}
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{{#set: ec number=EC-2.7.1.159}}
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{{#set: gene associated=Tiso_gene_15232}}
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{{#set: in pathway=PWY-6366|PWY-6365|PWY-6362|PWY-6554}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:22, 18 March 2018

Reaction 2.7.1.133-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ras-related_gtp-binding_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 D-myo-inositol (1,3,4)-trisphosphate[c] => 1 H+[c] + 1 ADP[c] + 1 D-myo-inositol (1,3,4,6)-tetrakisphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6366, D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis: PWY-6366
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6365, D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis: PWY-6365
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6362, 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian): PWY-6362
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6554, 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3): PWY-6554
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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