Difference between revisions of "Tiso gene 9264"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=AMP AMP] == * smiles: ** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP([O-])([O-])=O * inchi...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
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[[Category:Metabolite]]
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[[Category:Pathway]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=AMP AMP] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] ==
−
* smiles:
+
* taxonomic range:
−
** C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP([O-])([O-])=O
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* inchi key:
+
−
** InChIKey=UDMBCSSLTHHNCD-KQYNXXCUSA-L
+
 
* common name:
 
* common name:
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** AMP
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** jasmonic acid biosynthesis
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* molecular weight:
+
−
** 345.208   
+
 
* Synonym(s):
 
* Synonym(s):
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** 5'-AMP
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** jasmonate biosynthesis
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** adenosine-monophosphate
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−
** adenylic acid
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−
** adenosine 5'-phosphate
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** adenosine 5'-monophosphate
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−
** adenylate
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** 5'-adenylic acid
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** 5'-adenosine monophosphate
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== Reaction(s) known to consume the compound ==
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== Reaction(s) found ==
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* [[AMP-DEAMINASE-RXN]]
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'''15''' reactions found over '''19''' reactions in the full pathway
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* [[ADENYL-KIN-RXN]]
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−
* [[RXN-14074]]
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−
* [[AMP-DEPHOSPHORYLATION-RXN]]
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−
* [[ATAMm]]
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−
* [[ATAMf]]
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−
* [[AMP5N]]
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−
* [[ATAM]]
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−
== Reaction(s) known to produce the compound ==
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−
* [[ARGININE--TRNA-LIGASE-RXN]]
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−
* [[RXN66-483]]
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−
* [[RXN66-480]]
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−
* [[RXN0-7248]]
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−
* [[RXN66-484]]
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−
* [[BIS5-ADENOSYL-TRIPHOSPHATASE-RXN]]
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−
* [[GMP-SYN-GLUT-RXN]]
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* [[RXN66-555]]
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−
* [[ACYLCOASYN-RXN]]
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−
* [[3.1.13.4-RXN]]
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* [[ACETATE--COA-LIGASE-RXN]]
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−
* [[DIPHTINE--AMMONIA-LIGASE-RXN]]
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−
* [[ASPARTATE--TRNA-LIGASE-RXN]]
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−
* [[RXN-14570]]
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−
* [[ASNSYNB-RXN]]
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−
* [[R5PDP]]
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−
* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
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−
* [[RXN-7904]]
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−
* [[RXN-16418]]
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* [[6.1.1.24-RXN]]
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−
* [[ASNSYNA-RXN]]
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−
* [[DNA-LIGASE-ATP-RXN]]
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−
* [[LYSINE--TRNA-LIGASE-RXN]]
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−
* [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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−
* [[RXN-15733]]
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−
* [[RXN-9386]]
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−
* [[APN]]
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* [[RXN-9623]]
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−
* [[4-COUMARATE--COA-LIGASE-RXN]]
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−
* [[RXN-8655]]
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−
* [[ASPARAGINE--TRNA-LIGASE-RXN]]
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−
* [[GLUTAMINE--TRNA-LIGASE-RXN]]
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−
* [[6.3.4.10-RXN]]
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−
* [[ARGSUCCINSYN-RXN]]
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−
* [[RXN-2001]]
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−
* [[RXN0-1141]]
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−
* [[1.8.4.9-RXN]]
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−
* [[LNLNCACOAL]]
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−
* [[THREONINE--TRNA-LIGASE-RXN]]
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−
* [[AAL_fum]]
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−
* [[H2PTERIDINEPYROPHOSPHOKIN-RXN]]
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−
* [[METHIONINE--TRNA-LIGASE-RXN]]
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−
* [[RXN-17919]]
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−
* [[6.2.1.34-RXN]]
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−
* [[RXN-12978]]
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−
* [[ALANINE--TRNA-LIGASE-RXN]]
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−
* [[RXN0-7238]]
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−
* [[RXN0-7239]]
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−
* [[RXN-13039]]
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−
* [[RXN-9644]]
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−
* [[PROLINE--TRNA-LIGASE-RXN]]
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−
* [[ADPSUGPPHOSPHAT-RXN]]
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−
* [[RXN-8348]]
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−
* [[VALINE--TRNA-LIGASE-RXN]]
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−
* [[RXN-1126]]
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−
* [[PEPSYNTH-RXN]]
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−
* [[RXN-16165]]
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−
* [[RXN66-469]]
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−
* [[RXN-10919]]
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−
* [[RXN0-6524]]
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−
* [[RXN-10862]]
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−
* [[ADPA]]
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* [[RXN66-477]]
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−
* [[HISTIDINE--TRNA-LIGASE-RXN]]
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−
* [[RXN66-474]]
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−
* [[RXN-12184]]
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−
* [[RXN-13290]]
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−
* [[RNA-LIGASE-ATP-RXN]]
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−
* [[TYROSINE--TRNA-LIGASE-RXN]]
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−
* [[RXN-16393]]
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−
* [[RXN-16389]]
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−
* [[R223-RXN]]
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−
* [[TRANS-RXN0-623]]
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* [[RXN0-5038]]
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* [[ADENOSINE-KINASE-RXN]]
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−
* [[ADENYLYLSULFATASE-RXN]]
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−
* [[TMDPT]]
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−
* [[RXN66-474-R-2-HYDROXYSTEARATE/ATP/CO-A//CPD-14717/AMP/PPI.48.]]
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* [[GTPPYPHOSKIN-RXN]]
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−
* [[GMP-SYN-NH3-RXN]]
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−
* [[RXN-16401]]
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−
* [[RXN-16402]]
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* [[GDPPYPHOSKIN-RXN]]
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−
* [[RXN0-1441]]
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−
* [[SERINE--TRNA-LIGASE-RXN]]
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−
* [[LINOLENOYL-RXN]]
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−
* [[PANTOATE-BETA-ALANINE-LIG-RXN]]
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−
* [[DNNH]]
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−
* [[RXN-17155]]
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−
* [[RXN-16380]]
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−
* [[RNA-3-PHOSPHATE-CYCLASE-RXN]]
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−
* [[THIAMIN-PYROPHOSPHOKINASE-RXN]]
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−
* [[RXN-9673]]
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−
* [[CYSTEINE--TRNA-LIGASE-RXN]]
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−
* [[6.3.4.11-RXN]]
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−
* [[LEUCINE--TRNA-LIGASE-RXN]]
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−
* [[RXN-13614]]
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−
* [[GLYCINE--TRNA-LIGASE-RXN]]
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−
* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
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−
* [[RXN-10]]
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* [[RXN-10695]]
 
* [[RXN-10695]]
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* [[RXN0-5098]]
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** 2 associated gene(s):
−
* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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*** [[Tiso_gene_14183]]
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* [[6.3.4.9-RXN]]
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*** [[Tiso_gene_12275]]
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* [[BIOTINLIG-RXN]]
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** 1 reconstruction source(s) associated:
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* [[RXN0-2161]]
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*** [[orthology-esiliculosus]]
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* [[RXN-17127]]
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* [[RXN-10696]]
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* [[LNLCCOAL]]
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** 1 associated gene(s):
−
* [[APYRASE-RXN]]
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*** [[Tiso_gene_18566]]
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* [[GLURS-RXN]]
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** 2 reconstruction source(s) associated:
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* [[RXN-17927]]
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*** [[annotation-in-silico_annotation]]
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* [[2.7.9.3-RXN]]
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*** [[orthology-esiliculosus]]
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* [[ARDP]]
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* [[RXN-10697]]
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* [[FACOAL18111Z]]
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** 3 associated gene(s):
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* [[RXN0-2023]]
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*** [[Tiso_gene_16145]]
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* [[325-BISPHOSPHATE-NUCLEOTIDASE-RXN]]
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*** [[Tiso_gene_6885]]
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== Reaction(s) of unknown directionality ==
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*** [[Tiso_gene_14262]]
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* [[RPDPK]]
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** 1 reconstruction source(s) associated:
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* [[RXN-16415]]
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*** [[orthology-esiliculosus]]
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* [[PRPPSYN-RXN]]
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* [[RXN-10698]]
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* [[AMPSYN-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_5857]]
 +
*** [[Tiso_gene_14027]]
 +
*** [[Tiso_gene_18839]]
 +
*** [[Tiso_gene_14262]]
 +
*** [[Tiso_gene_18838]]
 +
*** [[Tiso_gene_14026]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10699]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_3855]]
 +
*** [[Tiso_gene_15327]]
 +
*** [[Tiso_gene_17451]]
 +
*** [[Tiso_gene_10116]]
 +
*** [[Tiso_gene_3856]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-10700]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_17451]]
 +
*** [[Tiso_gene_3855]]
 +
*** [[Tiso_gene_3856]]
 +
*** [[Tiso_gene_15327]]
 +
*** [[Tiso_gene_10116]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-10701]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_3855]]
 +
*** [[Tiso_gene_10116]]
 +
*** [[Tiso_gene_3856]]
 +
*** [[Tiso_gene_17451]]
 +
*** [[Tiso_gene_15327]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-10702]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_18838]]
 +
*** [[Tiso_gene_14262]]
 +
*** [[Tiso_gene_18839]]
 +
*** [[Tiso_gene_14027]]
 +
*** [[Tiso_gene_14026]]
 +
*** [[Tiso_gene_5857]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10703]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_18838]]
 +
*** [[Tiso_gene_5857]]
 +
*** [[Tiso_gene_18839]]
 +
*** [[Tiso_gene_14262]]
 +
*** [[Tiso_gene_14027]]
 +
*** [[Tiso_gene_14026]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10704]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_14262]]
 +
*** [[Tiso_gene_16145]]
 +
*** [[Tiso_gene_6885]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10705]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_14262]]
 +
*** [[Tiso_gene_16145]]
 +
*** [[Tiso_gene_6885]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10706]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_18566]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10707]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_18566]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-10708]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_10984]]
 +
*** [[Tiso_gene_801]]
 +
*** [[Tiso_gene_7477]]
 +
*** [[Tiso_gene_800]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-1321]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_4463]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
 
== External links  ==
 
== External links  ==
−
* NCI:
+
* ARACYC:
−
** [http://cactus.nci.nih.gov/ncidb2.2/?nsc=20264 20264]
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
−
* CAS : 61-19-8
+
{{#set: taxonomic range=TAX-33090}}
−
* METABOLIGHTS : MTBLC456215
+
{{#set: common name=jasmonic acid biosynthesis}}
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* PUBCHEM:
+
{{#set: common name=jasmonate biosynthesis}}
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15938965 15938965]
+
{{#set: reaction found=15}}
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* HMDB : HMDB00045
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{{#set: total reaction=19}}
−
* LIGAND-CPD:
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{{#set: completion rate=79.0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00020 C00020]
+
−
* CHEMSPIDER:
+
−
** [http://www.chemspider.com/Chemical-Structure.10239183.html 10239183]
+
−
* CHEBI:
+
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=456215 456215]
+
−
* BIGG : amp
+
−
{{#set: smiles=C(C3(C(C(C(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O)O))OP([O-])([O-])=O}}
+
−
{{#set: inchi key=InChIKey=UDMBCSSLTHHNCD-KQYNXXCUSA-L}}
+
−
{{#set: common name=AMP}}
+
−
{{#set: molecular weight=345.208    }}
+
−
{{#set: common name=5'-AMP|adenosine-monophosphate|adenylic acid|adenosine 5'-phosphate|adenosine 5'-monophosphate|adenylate|5'-adenylic acid|5'-adenosine monophosphate}}
+
−
{{#set: consumed by=AMP-DEAMINASE-RXN|ADENYL-KIN-RXN|RXN-14074|AMP-DEPHOSPHORYLATION-RXN|ATAMm|ATAMf|AMP5N|ATAM}}
+
−
{{#set: produced by=ARGININE--TRNA-LIGASE-RXN|RXN66-483|RXN66-480|RXN0-7248|RXN66-484|BIS5-ADENOSYL-TRIPHOSPHATASE-RXN|GMP-SYN-GLUT-RXN|RXN66-555|ACYLCOASYN-RXN|3.1.13.4-RXN|ACETATE--COA-LIGASE-RXN|DIPHTINE--AMMONIA-LIGASE-RXN|ASPARTATE--TRNA-LIGASE-RXN|RXN-14570|ASNSYNB-RXN|R5PDP|TRYPTOPHAN--TRNA-LIGASE-RXN|RXN-7904|RXN-16418|6.1.1.24-RXN|ASNSYNA-RXN|DNA-LIGASE-ATP-RXN|LYSINE--TRNA-LIGASE-RXN|UBIQUITIN--PROTEIN-LIGASE-RXN|RXN-15733|RXN-9386|APN|RXN-9623|4-COUMARATE--COA-LIGASE-RXN|RXN-8655|ASPARAGINE--TRNA-LIGASE-RXN|GLUTAMINE--TRNA-LIGASE-RXN|6.3.4.10-RXN|ARGSUCCINSYN-RXN|RXN-2001|RXN0-1141|1.8.4.9-RXN|LNLNCACOAL|THREONINE--TRNA-LIGASE-RXN|AAL_fum|H2PTERIDINEPYROPHOSPHOKIN-RXN|METHIONINE--TRNA-LIGASE-RXN|RXN-17919|6.2.1.34-RXN|RXN-12978|ALANINE--TRNA-LIGASE-RXN|RXN0-7238|RXN0-7239|RXN-13039|RXN-9644|PROLINE--TRNA-LIGASE-RXN|ADPSUGPPHOSPHAT-RXN|RXN-8348|VALINE--TRNA-LIGASE-RXN|RXN-1126|PEPSYNTH-RXN|RXN-16165|RXN66-469|RXN-10919|RXN0-6524|RXN-10862|ADPA|RXN66-477|HISTIDINE--TRNA-LIGASE-RXN|RXN66-474|RXN-12184|RXN-13290|RNA-LIGASE-ATP-RXN|TYROSINE--TRNA-LIGASE-RXN|RXN-16393|RXN-16389|R223-RXN|TRANS-RXN0-623|RXN0-5038|ADENOSINE-KINASE-RXN|ADENYLYLSULFATASE-RXN|TMDPT|RXN66-474-R-2-HYDROXYSTEARATE/ATP/CO-A//CPD-14717/AMP/PPI.48.|GTPPYPHOSKIN-RXN|GMP-SYN-NH3-RXN|RXN-16401|RXN-16402|GDPPYPHOSKIN-RXN|RXN0-1441|SERINE--TRNA-LIGASE-RXN|LINOLENOYL-RXN|PANTOATE-BETA-ALANINE-LIG-RXN|DNNH|RXN-17155|RXN-16380|RNA-3-PHOSPHATE-CYCLASE-RXN|THIAMIN-PYROPHOSPHOKINASE-RXN|RXN-9673|CYSTEINE--TRNA-LIGASE-RXN|6.3.4.11-RXN|LEUCINE--TRNA-LIGASE-RXN|RXN-13614|GLYCINE--TRNA-LIGASE-RXN|PHENYLALANINE--TRNA-LIGASE-RXN|RXN-10|RXN-10695|RXN0-5098|ISOLEUCINE--TRNA-LIGASE-RXN|6.3.4.9-RXN|BIOTINLIG-RXN|RXN0-2161|RXN-17127|LNLCCOAL|APYRASE-RXN|GLURS-RXN|RXN-17927|2.7.9.3-RXN|ARDP|FACOAL18111Z|RXN0-2023|325-BISPHOSPHATE-NUCLEOTIDASE-RXN}}
+
−
{{#set: consumed or produced by=RPDPK|RXN-16415|PRPPSYN-RXN|AMPSYN-RXN}}
+

Revision as of 18:22, 18 March 2018

Pathway PWY-735

  • taxonomic range:
  • common name:
    • jasmonic acid biosynthesis
  • Synonym(s):
    • jasmonate biosynthesis

Reaction(s) found

15 reactions found over 19 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9264&oldid=23861"