Difference between revisions of "TRNA-Adenosines-37"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12610 RXN-12610] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_monophospha...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12610 RXN-12610] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** pentose phosphate pathway (oxidative branch) I
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** thiamine_monophosphate_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''3''' reactions in the full pathway
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** 2 [[PROTON]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[CPD-13576]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[6PGLUCONOLACT-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 2 H+[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 thiamine phosphate[c] '''+''' 1 CO2[c]
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*** [[Tiso_gene_8585]]
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*** [[Tiso_gene_10799]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_20412]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_15950]]
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* [[Tiso_gene_2160]]
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*** [[Tiso_gene_5901]]
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** IN-SILICO_ANNOTATION
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** 6 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_10320]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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* [[Tiso_gene_2159]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***EC-NUMBER
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* [[GLU6PDEHYDROG-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-6907]], thiamine diphosphate biosynthesis III (Staphylococcus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6907 PWY-6907]
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*** [[Tiso_gene_16918]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_14877]]
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* [[PWY-6893]], thiamine diphosphate biosynthesis II (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6893 PWY-6893]
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** 4 reconstruction source(s) associated:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* [[annotation]]:
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*** [[orthology-synechocystis]]
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** [[pathwaytools]]:
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*** [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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* [[RXN-9952]]
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** 5 associated gene(s):
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*** [[Tiso_gene_91]]
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*** [[Tiso_gene_7157]]
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*** [[Tiso_gene_19590]]
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*** [[Tiso_gene_20238]]
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*** [[Tiso_gene_777]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=ORF}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
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{{#set: common name=thiamine_monophosphate_synthase}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: ec number=EC-2.5.1.3}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Tiso_gene_2160|Tiso_gene_10320|Tiso_gene_2159}}
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{{#set: common name=pentose phosphate pathway (oxidative branch) I}}
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{{#set: in pathway=PWY-6907|PWY-6893}}
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{{#set: reaction found=3}}
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{{#set: reconstruction category=annotation}}
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{{#set: total reaction=3}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 19:24, 18 March 2018

Pathway OXIDATIVEPENT-PWY

  • taxonomic range:
  • common name:
    • pentose phosphate pathway (oxidative branch) I
  • Synonym(s):

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




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